View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_2 (Length: 557)
Name: NF5006_low_2
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Original strand, 40326270 - 40326799
Alignment:
| Q |
9 |
gcatatgaaaaacatactttgggaaaggtcagtttgttaaatatatctcagttacttcgggagattactttccgcagctgcgtgcaggaataccttggtt |
108 |
Q |
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| T |
40326270 |
gcatatgaaaaacatactttgggaaaggtcaatttgttaaatagatctcagttacttcgagagattactctccgcagctgcgtgcaggaatgccatggtt |
40326369 |
T |
|
| Q |
109 |
taccaattagtttgttgtaggctgtagctaatttcctactctataattttaagcataacaaatttgttcaggttaaaaggcctttgcactagaaaccaaa |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326370 |
taccaattagtttgttgtag-------ctaatttcctactctataattttaagcataacaaatttgttcaggttaaaaggcctttgcactagaaaccaaa |
40326462 |
T |
|
| Q |
209 |
attatacttaataatnnnnnnnnnnnnnnnnnngcaatatgaatctctcaagtatgtacctgtatgatgcctttcacacgccaaactgagtgtttcataa |
308 |
Q |
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| T |
40326463 |
attatacttaataataataaaaaaaaaaaa---gcaatatgaatctctcaagtatgtacctgtatgatgcctttcacacgccaaactgagtgtttcataa |
40326559 |
T |
|
| Q |
309 |
ccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagtttctatattaacattgtgttctgtagataactgaacagctaatgtttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40326560 |
ccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagtttctatattaacattgtgttctgtagataactgaacggctaatgtttc |
40326659 |
T |
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| Q |
409 |
ccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgcaatatacagcttaccgttgcaaattatccccgccaaacaacatgta |
508 |
Q |
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| T |
40326660 |
ccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgcaatatacagcataccgttgcaaattatccccgccaaacaacatgta |
40326759 |
T |
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| Q |
509 |
ccagcagatgctatctgtggtttgttttgcctttgcttct |
548 |
Q |
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| T |
40326760 |
ccagcagatgctatctgtggtttgttttgccattgcttct |
40326799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 263 - 528
Target Start/End: Original strand, 28938748 - 28939013
Alignment:
| Q |
263 |
tgtacctgtatgatgcctttcacacgccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagttt |
362 |
Q |
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||||||||||||| |||||| || |||||||| |||| ||||||||||||| ||||||||||| ||||| || | | || ||||||||| | ||| |
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| T |
28938748 |
tgtacctgtatgaggcctttgacgcgccaaacattgtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttcatctctcactcttt |
28938847 |
T |
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| Q |
363 |
ctatattaacattgtgttctgtagataactgaacagctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgc |
462 |
Q |
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| T |
28938848 |
caaggttaacattatgttctgcagataattgtatggctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgagtcaccagaatttgc |
28938947 |
T |
|
| Q |
463 |
aatatacagcttaccgttgcaaattatccccgccaaacaacatgtaccagcagatgctatctgtgg |
528 |
Q |
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| T |
28938948 |
aatatataccagtccattgcaaattatccccaccaaacaacaagtacctgctgatgcaatatgtgg |
28939013 |
T |
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