View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5006_low_21 (Length: 242)

Name: NF5006_low_21
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5006_low_21
NF5006_low_21
[»] chr6 (7 HSPs)
chr6 (132-226)||(14029054-14029146)
chr6 (132-210)||(13936995-13937073)
chr6 (1-34)||(6167989-6168022)
chr6 (1-32)||(3094588-3094619)
chr6 (1-32)||(18893675-18893706)
chr6 (1-32)||(25335191-25335222)
chr6 (2-32)||(7141263-7141293)
[»] chr3 (20 HSPs)
chr3 (1-43)||(10841498-10841540)
chr3 (1-37)||(36430262-36430298)
chr3 (1-37)||(53974305-53974341)
chr3 (1-36)||(7679763-7679798)
chr3 (1-35)||(84385-84419)
chr3 (1-34)||(10999812-10999845)
chr3 (1-32)||(4044874-4044905)
chr3 (1-32)||(4516080-4516111)
chr3 (1-32)||(7156737-7156768)
chr3 (1-32)||(20657453-20657484)
chr3 (1-32)||(20835648-20835679)
chr3 (1-32)||(22781973-22782004)
chr3 (1-32)||(22786337-22786368)
chr3 (1-32)||(26090201-26090232)
chr3 (1-32)||(32236132-32236163)
chr3 (1-32)||(33966895-33966926)
chr3 (1-32)||(37971740-37971771)
chr3 (1-32)||(40586237-40586268)
chr3 (1-31)||(41069837-41069867)
chr3 (1-33)||(20048333-20048365)
[»] scaffold0065 (1 HSPs)
scaffold0065 (1-37)||(38465-38501)
[»] chr8 (23 HSPs)
chr8 (1-37)||(15839450-15839486)
chr8 (1-37)||(23357309-23357345)
chr8 (1-34)||(37577981-37578014)
chr8 (1-33)||(5988187-5988219)
chr8 (1-37)||(12713629-12713665)
chr8 (1-37)||(26290831-26290867)
chr8 (1-37)||(26304088-26304124)
chr8 (1-37)||(26337443-26337479)
chr8 (1-33)||(43664377-43664409)
chr8 (1-32)||(3032950-3032981)
chr8 (1-32)||(5599913-5599944)
chr8 (1-32)||(5640676-5640707)
chr8 (1-32)||(8013977-8014008)
chr8 (1-32)||(8656554-8656585)
chr8 (1-32)||(17122090-17122121)
chr8 (1-32)||(26122578-26122609)
chr8 (1-32)||(28885764-28885795)
chr8 (1-32)||(28909662-28909693)
chr8 (1-32)||(34565081-34565112)
chr8 (1-31)||(34917539-34917569)
chr8 (1-30)||(39365248-39365277)
chr8 (1-33)||(24822776-24822808)
chr8 (1-33)||(42512158-42512190)
[»] chr2 (17 HSPs)
chr2 (1-37)||(1481806-1481842)
chr2 (1-37)||(35895487-35895523)
chr2 (1-35)||(13196191-13196225)
chr2 (2-36)||(39697832-39697866)
chr2 (1-35)||(40811826-40811860)
chr2 (1-34)||(25853486-25853519)
chr2 (1-34)||(44143358-44143391)
chr2 (1-33)||(1520175-1520207)
chr2 (1-32)||(927064-927095)
chr2 (1-32)||(3178226-3178257)
chr2 (1-32)||(15011819-15011850)
chr2 (1-32)||(21657927-21657958)
chr2 (1-32)||(32551721-32551752)
chr2 (1-32)||(34202279-34202310)
chr2 (1-32)||(42342968-42342999)
chr2 (1-32)||(45505839-45505870)
chr2 (1-29)||(2390740-2390768)
[»] chr5 (12 HSPs)
chr5 (1-36)||(9065694-9065729)
chr5 (1-34)||(43293712-43293745)
chr5 (1-33)||(13145935-13145967)
chr5 (1-37)||(25084851-25084887)
chr5 (1-37)||(25142824-25142860)
chr5 (1-33)||(38760577-38760609)
chr5 (1-32)||(4156223-4156254)
chr5 (1-32)||(31527632-31527663)
chr5 (1-32)||(33280809-33280840)
chr5 (1-32)||(43518346-43518377)
chr5 (2-32)||(19617778-19617808)
chr5 (1-35)||(29920287-29920321)
[»] chr1 (23 HSPs)
chr1 (1-36)||(40400029-40400064)
chr1 (1-34)||(11173553-11173586)
chr1 (1-33)||(6653223-6653255)
chr1 (1-37)||(13240272-13240308)
chr1 (1-33)||(39569508-39569540)
chr1 (1-33)||(39982262-39982294)
chr1 (1-33)||(44721870-44721902)
chr1 (1-32)||(2482685-2482716)
chr1 (1-32)||(14247498-14247529)
chr1 (1-32)||(15932786-15932817)
chr1 (1-32)||(24317181-24317212)
chr1 (1-32)||(26151218-26151249)
chr1 (1-32)||(33010839-33010870)
chr1 (1-32)||(34270826-34270857)
chr1 (1-32)||(40536841-40536872)
chr1 (1-32)||(42948189-42948220)
chr1 (1-32)||(50727797-50727828)
chr1 (1-32)||(51290549-51290580)
chr1 (1-32)||(52024725-52024756)
chr1 (1-32)||(52044442-52044473)
chr1 (2-32)||(51677302-51677332)
chr1 (1-34)||(18909213-18909246)
chr1 (1-33)||(2138298-2138330)
[»] chr7 (21 HSPs)
chr7 (1-35)||(38283640-38283674)
chr7 (1-34)||(19687094-19687127)
chr7 (1-34)||(42095823-42095856)
chr7 (1-37)||(43047135-43047171)
chr7 (1-33)||(46322095-46322127)
chr7 (1-32)||(7790903-7790934)
chr7 (1-32)||(21279118-21279149)
chr7 (1-32)||(25876776-25876807)
chr7 (1-32)||(26015915-26015946)
chr7 (1-32)||(32542232-32542263)
chr7 (1-32)||(32662417-32662448)
chr7 (1-32)||(34591676-34591707)
chr7 (1-32)||(35924230-35924261)
chr7 (1-32)||(38876103-38876134)
chr7 (1-32)||(39074405-39074436)
chr7 (1-32)||(40705561-40705592)
chr7 (1-35)||(8203490-8203524)
chr7 (1-35)||(8215967-8216001)
chr7 (1-35)||(47779558-47779592)
chr7 (1-37)||(40995182-40995218)
chr7 (1-37)||(47065989-47066025)
[»] chr4 (19 HSPs)
chr4 (1-34)||(10542099-10542132)
chr4 (1-32)||(20737690-20737721)
chr4 (1-32)||(23895262-23895293)
chr4 (1-32)||(38291922-38291953)
chr4 (1-32)||(39540468-39540499)
chr4 (1-32)||(42348660-42348691)
chr4 (1-32)||(42724248-42724279)
chr4 (1-32)||(52913260-52913291)
chr4 (1-32)||(53036082-53036113)
chr4 (1-32)||(53875177-53875208)
chr4 (1-32)||(55183594-55183625)
chr4 (1-32)||(55215660-55215691)
chr4 (1-32)||(55219867-55219898)
chr4 (1-32)||(56362818-56362849)
chr4 (1-34)||(52307524-52307557)
chr4 (1-33)||(613822-613854)
chr4 (1-33)||(20434161-20434193)
chr4 (1-33)||(28406505-28406537)
chr4 (1-37)||(43830284-43830320)
[»] scaffold0438 (1 HSPs)
scaffold0438 (1-37)||(2168-2204)
[»] scaffold0276 (2 HSPs)
scaffold0276 (1-33)||(12519-12551)
scaffold0276 (1-32)||(14102-14133)
[»] scaffold0391 (1 HSPs)
scaffold0391 (1-32)||(3875-3906)
[»] scaffold0368 (1 HSPs)
scaffold0368 (1-32)||(13862-13893)
[»] scaffold0248 (1 HSPs)
scaffold0248 (1-32)||(3077-3108)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-32)||(157168-157199)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 14029054 - 14029146
Alignment:
Q  132 aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtattgtttgtggtcctaat 226  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  14029054 aaggattctgatcctaataattattacacaaattatcccgtata--tttttgttcctaattacttaaatatcaatttattgtttatggtcctaat 14029146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 13936995 - 13937073
Alignment:
Q  132 aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtat 210  Q
    ||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  13936995 aaggattatgatcctaataattatcacacaaattataccgtatatatttttgttcctaattacttaaatatcaatgtat 13937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6167989 - 6168022
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6167989 catgattaactagggtgcaagtagaaaaactcaa 6168022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3094619 - 3094588
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  3094619 catgattaactagggtgcaagtagaaaaactc 3094588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 18893706 - 18893675
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  18893706 catgattaactagggtgcaagtagaaaaactc 18893675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 25335191 - 25335222
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  25335191 catgattaactagggtgcaagtagaaaaactc 25335222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 7141293 - 7141263
Alignment:
Q  2 atgattaactagggtgcaagtagaaaaactc 32  Q
    |||||||||||||||||||||||||||||||    
T  7141293 atgattaactagggtgcaagtagaaaaactc 7141263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10841498 - 10841540
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaacaaaac 43  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  10841498 catgattaactagggtgcaagtagaaaaactcaaaaaaaaaac 10841540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36430298 - 36430262
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  36430298 catgattaactagggtgcaagtagaaaaactcaaaaa 36430262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53974341 - 53974305
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  53974341 catgattaactagggtgcaagtagaaaaactcaaaaa 53974305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7679763 - 7679798
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  7679763 catgattaactagggtgcaagtagaaaaactcaaaa 7679798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 84419 - 84385
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  84419 catgattaactagggtgcaagtagaaaaactcaaa 84385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10999812 - 10999845
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10999812 catgattaactagggtgcaagtagaaaaactcaa 10999845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4044874 - 4044905
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  4044874 catgattaactagggtgcaagtagaaaaactc 4044905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4516080 - 4516111
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  4516080 catgattaactagggtgcaagtagaaaaactc 4516111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 7156737 - 7156768
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  7156737 catgattaactagggtgcaagtagaaaaactc 7156768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20657453 - 20657484
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  20657453 catgattaactagggtgcaagtagaaaaactc 20657484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20835648 - 20835679
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  20835648 catgattaactagggtgcaagtagaaaaactc 20835679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22781973 - 22782004
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  22781973 catgattaactagggtgcaagtagaaaaactc 22782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22786337 - 22786368
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  22786337 catgattaactagggtgcaagtagaaaaactc 22786368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 26090232 - 26090201
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26090232 catgattaactagggtgcaagtagaaaaactc 26090201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 32236163 - 32236132
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  32236163 catgattaactagggtgcaagtagaaaaactc 32236132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33966926 - 33966895
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  33966926 catgattaactagggtgcaagtagaaaaactc 33966895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 37971740 - 37971771
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  37971740 catgattaactagggtgcaagtagaaaaactc 37971771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40586237 - 40586268
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40586237 catgattaactagggtgcaagtagaaaaactc 40586268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41069867 - 41069837
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaact 31  Q
    |||||||||||||||||||||||||||||||    
T  41069867 catgattaactagggtgcaagtagaaaaact 41069837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20048365 - 20048333
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||| ||||||||||||||||||    
T  20048365 catgattaactaggatgcaagtagaaaaactca 20048333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38465 - 38501
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  38465 catgattaactagggtgcaagtagaaaaactcaaaaa 38501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15839486 - 15839450
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  15839486 catgattaactagggtgcaagtagaaaaactcaaaaa 15839450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23357309 - 23357345
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  23357309 catgattaactagggtgcaagtagaaaaactcaaaaa 23357345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37578014 - 37577981
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37578014 catgattaactagggtgcaagtagaaaaactcaa 37577981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5988219 - 5988187
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  5988219 catgattaactagggtgcaagtagaaaaactca 5988187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12713629 - 12713665
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12713629 catgattaactagggtgcaagtagaaaaactctaaaa 12713665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26290831 - 26290867
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26290831 catgattaactagggtgcaagtagaaaaactctaaaa 26290867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26304088 - 26304124
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26304088 catgattaactagggtgcaagtagaaaaactctaaaa 26304124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26337443 - 26337479
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26337443 catgattaactagggtgcaagtagaaaaactctaaaa 26337479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43664377 - 43664409
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  43664377 catgattaactagggtgcaagtagaaaaactca 43664409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3032950 - 3032981
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  3032950 catgattaactagggtgcaagtagaaaaactc 3032981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 5599913 - 5599944
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  5599913 catgattaactagggtgcaagtagaaaaactc 5599944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 5640707 - 5640676
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  5640707 catgattaactagggtgcaagtagaaaaactc 5640676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 8013977 - 8014008
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  8013977 catgattaactagggtgcaagtagaaaaactc 8014008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8656585 - 8656554
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  8656585 catgattaactagggtgcaagtagaaaaactc 8656554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 17122121 - 17122090
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  17122121 catgattaactagggtgcaagtagaaaaactc 17122090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26122578 - 26122609
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26122578 catgattaactagggtgcaagtagaaaaactc 26122609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 28885764 - 28885795
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  28885764 catgattaactagggtgcaagtagaaaaactc 28885795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28909693 - 28909662
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  28909693 catgattaactagggtgcaagtagaaaaactc 28909662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34565081 - 34565112
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  34565081 catgattaactagggtgcaagtagaaaaactc 34565112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34917569 - 34917539
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaact 31  Q
    |||||||||||||||||||||||||||||||    
T  34917569 catgattaactagggtgcaagtagaaaaact 34917539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39365277 - 39365248
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaac 30  Q
    ||||||||||||||||||||||||||||||    
T  39365277 catgattaactagggtgcaagtagaaaaac 39365248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24822776 - 24822808
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||| ||||||||||||    
T  24822776 catgattaactagggtgcaactagaaaaactca 24822808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42512190 - 42512158
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||| ||||||||||||||||||    
T  42512190 catgattaactaggatgcaagtagaaaaactca 42512158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1481842 - 1481806
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  1481842 catgattaactagggtgcaagtagaaaaactcaaaaa 1481806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35895523 - 35895487
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35895523 catgattaactagggtgcaagtagaaaaactcaaaaa 35895487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13196191 - 13196225
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  13196191 catgattaactagggtgcaagtagaaaaactcaaa 13196225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 39697832 - 39697866
Alignment:
Q  2 atgattaactagggtgcaagtagaaaaactcaaaa 36  Q
    |||||||||||||||||||||||||||||||||||    
T  39697832 atgattaactagggtgcaagtagaaaaactcaaaa 39697866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40811826 - 40811860
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40811826 catgattaactagggtgcaagtagaaaaactcaaa 40811860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25853486 - 25853519
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25853486 catgattaactagggtgcaagtagaaaaactcaa 25853519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44143391 - 44143358
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  44143391 catgattaactagggtgcaagtagaaaaactcaa 44143358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1520207 - 1520175
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  1520207 catgattaactagggtgcaagtagaaaaactca 1520175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 927095 - 927064
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  927095 catgattaactagggtgcaagtagaaaaactc 927064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3178257 - 3178226
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  3178257 catgattaactagggtgcaagtagaaaaactc 3178226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15011850 - 15011819
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  15011850 catgattaactagggtgcaagtagaaaaactc 15011819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 21657958 - 21657927
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  21657958 catgattaactagggtgcaagtagaaaaactc 21657927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32551721 - 32551752
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  32551721 catgattaactagggtgcaagtagaaaaactc 32551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 34202310 - 34202279
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  34202310 catgattaactagggtgcaagtagaaaaactc 34202279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42342999 - 42342968
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  42342999 catgattaactagggtgcaagtagaaaaactc 42342968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 45505839 - 45505870
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  45505839 catgattaactagggtgcaagtagaaaaactc 45505870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2390740 - 2390768
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaa 29  Q
    |||||||||||||||||||||||||||||    
T  2390740 catgattaactagggtgcaagtagaaaaa 2390768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9065729 - 9065694
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  9065729 catgattaactagggtgcaagtagaaaaactcaaaa 9065694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43293712 - 43293745
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  43293712 catgattaactagggtgcaagtagaaaaactcaa 43293745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13145935 - 13145967
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  13145935 catgattaactagggtgcaagtagaaaaactca 13145967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25084887 - 25084851
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25084887 catgattaactagggtgcaagtagaaaaactctaaaa 25084851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25142860 - 25142824
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25142860 catgattaactagggtgcaagtagaaaaactctaaaa 25142824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38760577 - 38760609
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  38760577 catgattaactagggtgcaagtagaaaaactca 38760609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 4156223 - 4156254
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  4156223 catgattaactagggtgcaagtagaaaaactc 4156254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31527632 - 31527663
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  31527632 catgattaactagggtgcaagtagaaaaactc 31527663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33280840 - 33280809
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  33280840 catgattaactagggtgcaagtagaaaaactc 33280809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 43518346 - 43518377
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  43518346 catgattaactagggtgcaagtagaaaaactc 43518377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 19617778 - 19617808
Alignment:
Q  2 atgattaactagggtgcaagtagaaaaactc 32  Q
    |||||||||||||||||||||||||||||||    
T  19617778 atgattaactagggtgcaagtagaaaaactc 19617808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29920321 - 29920287
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  29920321 catgattaactagggtgctagtagaaaaactcaaa 29920287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40400064 - 40400029
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  40400064 catgattaactagggtgcaagtagaaaaactcaaaa 40400029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11173553 - 11173586
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  11173553 catgattaactagggtgcaagtagaaaaactcaa 11173586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6653255 - 6653223
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  6653255 catgattaactagggtgcaagtagaaaaactca 6653223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13240272 - 13240308
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13240272 catgattaactagggtgcaagtagaaaaactctaaaa 13240308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39569508 - 39569540
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  39569508 catgattaactagggtgcaagtagaaaaactca 39569540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39982294 - 39982262
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  39982294 catgattaactagggtgcaagtagaaaaactca 39982262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44721902 - 44721870
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  44721902 catgattaactagggtgcaagtagaaaaactca 44721870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2482685 - 2482716
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  2482685 catgattaactagggtgcaagtagaaaaactc 2482716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14247498 - 14247529
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  14247498 catgattaactagggtgcaagtagaaaaactc 14247529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15932817 - 15932786
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  15932817 catgattaactagggtgcaagtagaaaaactc 15932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 24317212 - 24317181
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  24317212 catgattaactagggtgcaagtagaaaaactc 24317181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26151218 - 26151249
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26151218 catgattaactagggtgcaagtagaaaaactc 26151249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 33010839 - 33010870
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  33010839 catgattaactagggtgcaagtagaaaaactc 33010870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 34270826 - 34270857
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  34270826 catgattaactagggtgcaagtagaaaaactc 34270857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40536841 - 40536872
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40536841 catgattaactagggtgcaagtagaaaaactc 40536872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42948220 - 42948189
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  42948220 catgattaactagggtgcaagtagaaaaactc 42948189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 50727828 - 50727797
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  50727828 catgattaactagggtgcaagtagaaaaactc 50727797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 51290580 - 51290549
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  51290580 catgattaactagggtgcaagtagaaaaactc 51290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 52024756 - 52024725
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  52024756 catgattaactagggtgcaagtagaaaaactc 52024725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 52044442 - 52044473
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  52044442 catgattaactagggtgcaagtagaaaaactc 52044473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 51677302 - 51677332
Alignment:
Q  2 atgattaactagggtgcaagtagaaaaactc 32  Q
    |||||||||||||||||||||||||||||||    
T  51677302 atgattaactagggtgcaagtagaaaaactc 51677332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18909246 - 18909213
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  18909246 catgattaactagggtgtaagtagaaaaactcaa 18909213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2138298 - 2138330
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    ||||||||||||| |||||||||||||||||||    
T  2138298 catgattaactagagtgcaagtagaaaaactca 2138330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38283640 - 38283674
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38283640 catgattaactagggtgcaagtagaaaaactcaaa 38283674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19687127 - 19687094
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  19687127 catgattaactagggtgcaagtagaaaaactcaa 19687094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42095823 - 42095856
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  42095823 catgattaactagggtgcaagtagaaaaactcaa 42095856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43047135 - 43047171
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  43047135 catgattaactagggtgcaagtagaaaaactctaaaa 43047171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46322095 - 46322127
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  46322095 catgattaactagggtgcaagtagaaaaactca 46322127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7790934 - 7790903
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  7790934 catgattaactagggtgcaagtagaaaaactc 7790903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 21279118 - 21279149
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  21279118 catgattaactagggtgcaagtagaaaaactc 21279149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25876807 - 25876776
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  25876807 catgattaactagggtgcaagtagaaaaactc 25876776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 26015915 - 26015946
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  26015915 catgattaactagggtgcaagtagaaaaactc 26015946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32542232 - 32542263
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  32542232 catgattaactagggtgcaagtagaaaaactc 32542263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 32662417 - 32662448
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  32662417 catgattaactagggtgcaagtagaaaaactc 32662448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 34591707 - 34591676
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  34591707 catgattaactagggtgcaagtagaaaaactc 34591676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 35924261 - 35924230
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  35924261 catgattaactagggtgcaagtagaaaaactc 35924230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38876103 - 38876134
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  38876103 catgattaactagggtgcaagtagaaaaactc 38876134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39074405 - 39074436
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  39074405 catgattaactagggtgcaagtagaaaaactc 39074436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40705561 - 40705592
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  40705561 catgattaactagggtgcaagtagaaaaactc 40705592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8203490 - 8203524
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  8203490 catgattaactaaggtgcaagtagaaaaactcaaa 8203524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8215967 - 8216001
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  8215967 catgattaactaaggtgcaagtagaaaaactcaaa 8216001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 47779558 - 47779592
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaa 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  47779558 catgattaactaggatgcaagtagaaaaactcaaa 47779592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40995218 - 40995182
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  40995218 catgattaantagggtgcaagtagaaaaactctaaaa 40995182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47065989 - 47066025
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  47065989 catgattaagtagggtgcaagtagaaaaactccaaaa 47066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10542099 - 10542132
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10542099 catgattaactagggtgcaagtagaaaaactcaa 10542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 20737721 - 20737690
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  20737721 catgattaactagggtgcaagtagaaaaactc 20737690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23895262 - 23895293
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  23895262 catgattaactagggtgcaagtagaaaaactc 23895293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38291922 - 38291953
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  38291922 catgattaactagggtgcaagtagaaaaactc 38291953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39540468 - 39540499
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  39540468 catgattaactagggtgcaagtagaaaaactc 39540499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 42348691 - 42348660
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  42348691 catgattaactagggtgcaagtagaaaaactc 42348660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 42724248 - 42724279
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  42724248 catgattaactagggtgcaagtagaaaaactc 42724279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 52913260 - 52913291
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  52913260 catgattaactagggtgcaagtagaaaaactc 52913291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 53036082 - 53036113
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  53036082 catgattaactagggtgcaagtagaaaaactc 53036113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 53875177 - 53875208
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  53875177 catgattaactagggtgcaagtagaaaaactc 53875208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 55183594 - 55183625
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  55183594 catgattaactagggtgcaagtagaaaaactc 55183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 55215660 - 55215691
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  55215660 catgattaactagggtgcaagtagaaaaactc 55215691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 55219898 - 55219867
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  55219898 catgattaactagggtgcaagtagaaaaactc 55219867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 56362849 - 56362818
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  56362849 catgattaactagggtgcaagtagaaaaactc 56362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 52307524 - 52307557
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaa 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  52307524 catgattaactagggtgtaagtagaaaaactcaa 52307557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 613854 - 613822
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    ||||||||||| |||||||||||||||||||||    
T  613854 catgattaactggggtgcaagtagaaaaactca 613822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20434193 - 20434161
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    ||||||||| |||||||||||||||||||||||    
T  20434193 catgattaagtagggtgcaagtagaaaaactca 20434161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28406505 - 28406537
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    ||||||||||||||||||||| |||||||||||    
T  28406505 catgattaactagggtgcaaggagaaaaactca 28406537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43830284 - 43830320
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  43830284 catgattaactagggtgcaaggagaaaaactctaaaa 43830320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2168 - 2204
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactcaaaaa 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2168 catgattaactagggtgcaagtagaaaaactctaaaa 2204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12551 - 12519
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactca 33  Q
    |||||||||||||||||||||||||||||||||    
T  12551 catgattaactagggtgcaagtagaaaaactca 12519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14102 - 14133
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  14102 catgattaactagggtgcaagtagaaaaactc 14133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3906 - 3875
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  3906 catgattaactagggtgcaagtagaaaaactc 3875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13893 - 13862
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  13893 catgattaactagggtgcaagtagaaaaactc 13862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3077 - 3108
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  3077 catgattaactagggtgcaagtagaaaaactc 3108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 157168 - 157199
Alignment:
Q  1 catgattaactagggtgcaagtagaaaaactc 32  Q
    ||||||||||||||||||||||||||||||||    
T  157168 catgattaactagggtgcaagtagaaaaactc 157199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University