View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5006_low_22 (Length: 234)
Name: NF5006_low_22
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10124664 - 10124448
Alignment:
| Q |
1 |
ccaaaacatcgagttttcttttctcttatcataatgatattaacaaaaacaaagttataatgaaaactgaatttgaaaacacacttgcctttaacttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10124664 |
ccaaaacatcgagttttcttttctcttatcataatgatattagcaaaaacaaagttataatgaaaactgaatttcaaaacacacttgcctttaacttctc |
10124565 |
T |
|
| Q |
101 |
ctgcaaatcctcactttcatcacctagttcagaagaagccatcgatgcaacagctagatgcccaacgtagtcctcaaacaattcacttccaaagagcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124564 |
ctgcaaatcctcactttcatcacctagttcagaagaagccatcgatgcaacagctagatgcccaacgtagtcctcaaacaattcacttccaaagagcaag |
10124465 |
T |
|
| Q |
201 |
gcaaagacagccattgg |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10124464 |
gcaaagacagccattgg |
10124448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 10117904 - 10117733
Alignment:
| Q |
46 |
aaaacaaagttataatgaaaactgaatttgaaaacacacttgcctttaacttctcctgcaaatcctcactttcatcacctagttcagaagaagccatcga |
145 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||||| ||| ||||||||||||||| || || | |||||||||||||||||||||| |
|
|
| T |
10117904 |
aaaacaaagttataacgaaaactgaatttcaaaacatgcttgcctttagcttttcctgcaaatcctcaattccactagctagttcagaagaagccatcga |
10117805 |
T |
|
| Q |
146 |
tgcaacagctagatgcccaacgtagtcctcaaacaattcacttccaaagagcaaggcaaagacagccattgg |
217 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||||||||||||| ||| |||| ||||||||| |
|
|
| T |
10117804 |
tgcaacatctagatgcccaacatagtcctcaaacaatccacttccaaagagctgggcgaagaaagccattgg |
10117733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University