View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_24 (Length: 227)
Name: NF5006_low_24
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 23679048 - 23679274
Alignment:
| Q |
6 |
agcttctgtgaaactttcggtccatccttgattattggatgaactctaccatagg-------------agtttagtcttgatagaggaaaaaagaaacaa |
92 |
Q |
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| T |
23679048 |
agcttctgtgaaactttcggtccatccttgattattggatgaactctaccatagtgattgaattaaaaagtttagtcttgatagaggaaaaaagaaacaa |
23679147 |
T |
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| Q |
93 |
agaaacaatgactttccctccctgtannnnnnnnccttgtgagataagtttgtctcattcttttgtagcttatggtttattaattcattttgtagaaaaa |
192 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23679148 |
--------tgactttccctccctgtattttttttccttgtgagataagtttgtctcattcttttgtagcttatggtttattaattcattttgtagaaaaa |
23679239 |
T |
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| Q |
193 |
ttatacagaatttgacgtcaaaatttgtctgcaaa |
227 |
Q |
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||| |||||||||||||||||||||||| |||||| |
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| T |
23679240 |
ttagacagaatttgacgtcaaaatttgtttgcaaa |
23679274 |
T |
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