View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5006_low_26 (Length: 220)
Name: NF5006_low_26
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 39266631 - 39266527
Alignment:
| Q |
69 |
acatttatctgtttccaaagcatggcctctacccatccttgaaggnnnnnnnnntggcagtcacgcagattgaacatttatcagagatgatattttacct |
168 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39266631 |
acatttatctatttccaaagcatggcctctacccatccttgaagaaaaaaaaaatggcagtcacgcagattgaacatttatcagagatgatattttacct |
39266532 |
T |
|
| Q |
169 |
ctctc |
173 |
Q |
| |
|
|||| |
|
|
| T |
39266531 |
ttctc |
39266527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 39266466 - 39266415
Alignment:
| Q |
156 |
tgatattttacctctctcatcgaagatggcttcacacagattggtatctctg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39266466 |
tgatattttacctctctcatcgaagatggcttcacgcagattggtatctctg |
39266415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 39266701 - 39266651
Alignment:
| Q |
19 |
ctcatttgactgtgattattttagacatttgcgataccaatgaaaactcaa |
69 |
Q |
| |
|
|||||||||||| |||||||||||||||| | |||||||||||||||||| |
|
|
| T |
39266701 |
ctcatttgactgctattattttagacatttcccataccaatgaaaactcaa |
39266651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 49156707 - 49156671
Alignment:
| Q |
167 |
ctctctcatcgaagatggcttcacacagattggtatc |
203 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49156707 |
ctctctcatcgaagatggcttcacgcagattggtatc |
49156671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University