View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_8 (Length: 352)
Name: NF5006_low_8
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 41819883 - 41819549
Alignment:
| Q |
18 |
tgttcaaatttggaaaggttatattgataatttaaattctcaaaccccttaaaaagtggaacttacattcatattaactctctttccagtttgtagcact |
117 |
Q |
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| T |
41819883 |
tgttcaaatttggaaaggttatattgataatttaaattttcaaaccccttaaaaagtggaacttacattcatattaactctctttccagtttgtagcact |
41819784 |
T |
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| Q |
118 |
cactcaacccctgaactgtttggcctttgtatttgatggtgtcaactttggggcatctgattttgcatattcagccttctccatggtatgtaaattcatc |
217 |
Q |
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| T |
41819783 |
cactcaacccctgaactgtttggcctttgtatttgatggtgtcaactttggggcatctgattttgcatattcagccttctccatggtatgtaaattcatc |
41819684 |
T |
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| Q |
218 |
catgtgtttaatctgctatattttaatctacatcaatcttaaagaatcattgaaaatgatgcagtttcaatatacgcagcaccgatacttcacatcaaaa |
317 |
Q |
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| T |
41819683 |
catgtgtttaatctgctatattttaatctacatcaatcttaaagaatcattgaaaatgatgcagtttcaatatacgcagcaccgatacttcacatcaaaa |
41819584 |
T |
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| Q |
318 |
acatgtttggtgtctgacatgtctccgtgttcaac |
352 |
Q |
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| T |
41819583 |
acatgtttggtgtctgacatgtctccgtgttcaac |
41819549 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 9278998 - 9279063
Alignment:
| Q |
140 |
gcctttgtatttgatggtgtcaactttggggcatctgattttgcatattcagccttctccatggta |
205 |
Q |
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| T |
9278998 |
gcctttgtctttgatggtgtgaactatggagcatctgatttcgcttattcagcatactccttggta |
9279063 |
T |
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