View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5006_low_9 (Length: 348)
Name: NF5006_low_9
Description: NF5006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5006_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 35638668 - 35638985
Alignment:
| Q |
15 |
tgttgaacctttttgcactcacttccaaacctttaaatagaagaagcttcaaggcatcaaccccctcttgcaaagcctcgtcaatctgtccaacaagaaa |
114 |
Q |
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| T |
35638668 |
tgttgaacctttttgcactcacttccaaacctataaatagaagaagcttcaaggcatcaaccccctcttgcaaagcctcgtcaatctgtccaacaagaaa |
35638767 |
T |
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| Q |
115 |
gataagagaaaaagaaacattgaacaaatgaagatttttgcaacttggctcgtttccatatagtggatgtagcctggtgttcgaaaatgaaatagaatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35638768 |
gataagagaaaaagaaacattgaacaaatgaagatttttgcaacttggctcgtttccatatagtggatgtagcctggtgttcgaaaatgaaatagaatca |
35638867 |
T |
|
| Q |
215 |
gctagtggctggtgctattttcattttggatgttcgagaaaatttcatgttggatgcaactaataactattgctcccatttgcccagatgttttccaatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
35638868 |
gctagtggctggtgctattttcattttggatgttcgagaaaatttcatgttggatgcaactaataactattgctcccatttgcccaaatattttccaatt |
35638967 |
T |
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| Q |
315 |
catcacattaatatttaa |
332 |
Q |
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|||||||||||||||||| |
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| T |
35638968 |
catcacattaatatttaa |
35638985 |
T |
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