View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5007-Insertion-1 (Length: 1031)
Name: NF5007-Insertion-1
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5007-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 46440914 - 46441429
Alignment:
| Q |
8 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46440914 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaat |
46441013 |
T |
|
| Q |
108 |
cgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46441014 |
cgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
46441113 |
T |
|
| Q |
208 |
caaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaacac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46441114 |
caaccttgctgatgaggttgttgtcatccttaatttcctagagagttctcattgccctaacgtttatgtacacgaatcaaatttgccattgattcaacac |
46441213 |
T |
|
| Q |
308 |
atcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagagctt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46441214 |
atcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatgacatcaccaagttcatcaatgatgtatgtgttagagctt |
46441313 |
T |
|
| Q |
408 |
ttaaggatatcattgaacaactgaattatcacagggctatgaaggagcaagagttatgtcttgcaaatattcatggagctggtgttattcctactcactt |
507 |
Q |
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| T |
46441314 |
ttacggatatcattgaacaactgaattatcacagggctatgaaggagcaagagttatatcttgcaaatattcatggagctggtgttattcctactcactt |
46441413 |
T |
|
| Q |
508 |
gcatccagaggaggta |
523 |
Q |
| |
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||||||||| |||||| |
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| T |
46441414 |
gcatccagaagaggta |
46441429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 16 - 477
Target Start/End: Complemental strand, 18331725 - 18331264
Alignment:
| Q |
16 |
tgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaatcgataaat |
115 |
Q |
| |
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||||||||||||| |||| ||||| ||||||| |||||| | |||||||||||||||||| |||| | ||||| |||||| | ||| || |||||| |
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| T |
18331725 |
tgtgaccaaagaagaatttaacttgttttacagtgttgatcgacaactcttcactcgtttgctggtcgcgcttgatcgtgagatctctcagtcaataaat |
18331626 |
T |
|
| Q |
116 |
gtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaacaaccttg |
215 |
Q |
| |
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|||||||| ||| | |||||| ||||| ||| | ||| | ||||||||||||||| |||||| ||| |||||||| | ||||| | |||||||| |
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|
| T |
18331625 |
gtaatggccttcctcatgtggcttgagaggaaatccaaatactataatttagtagcaaagattcttcaacaatggtcggatgttatgcttagcaaccttg |
18331526 |
T |
|
| Q |
216 |
ctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaacacatcttgcg |
315 |
Q |
| |
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|||| |||| |||||||||||| |||| ||| | |||||| |||| ||||||| || |||| | |||| || |||||||||||||||||||||| || |
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| T |
18331525 |
ctgacgaggctgttgtcatcctgaattgcattgggagttcccattaccctaacacttttgtaggcaaatcgaagttgccattgattcaacacatctgtcg |
18331426 |
T |
|
| Q |
316 |
tagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagagcttttaaggat |
415 |
Q |
| |
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| |||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
18331425 |
tttcaatgtgacgcttgagtttttccatgaaaaacgcctcgaagtgatcactggtgtcaccaagatcatcaatgatgtatgtgttagagcttttacagat |
18331326 |
T |
|
| Q |
416 |
atcattgaacaactgaattatcacagggctatgaaggagcaagagttatgtcttgcaaatat |
477 |
Q |
| |
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|| |||||| || |||||||| | ||| ||||||| |||||||| |||| |||||||||||| |
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|
| T |
18331325 |
attattgaaaaaatgaattatgataggactatgaaagagcaagatttatatcttgcaaatat |
18331264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 105 - 475
Target Start/End: Original strand, 17616215 - 17616584
Alignment:
| Q |
105 |
aatcgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgct |
204 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||| | | ||||||| | ||||| |||||||||| |||| ||||||| | | | ||||| |
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|
| T |
17616215 |
aatcaataagtgtaatggctttcttgatttggattgaaagaaaaagtaaacaattcaatttggtagcaaatactcttcaacattggcctaatgtcatgct |
17616314 |
T |
|
| Q |
205 |
aaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaa |
304 |
Q |
| |
|
|| || |||||||||||| ||||||| |||||||||| ||| |||||||||| | ||||||| || | || || || |||| |||||||||| |
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|
| T |
17616315 |
aagcagtcttgctgatgagtttgttgtaatccttaattgcattgagagttctcgataccctaactcttttttaaggaaaaataagttgctattgattcaa |
17616414 |
T |
|
| Q |
305 |
cacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagag |
404 |
Q |
| |
|
|| ||| ||||| | |||||||| | | ||||||||||||||||||||||| |||||| || |||| |||||||| ||| |||| ||| |||||| |
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|
| T |
17616415 |
caaatcatgcgtcgcaatgtgacttttgaatttttccatgaaaaacgcctcgagctgatcattgatgtcacaaagttcattaataatgtctgtattagag |
17616514 |
T |
|
| Q |
405 |
cttttaaggatatcattgaacaactgaattatcacagggctatgaaggagcaagagttatgtcttgcaaat |
475 |
Q |
| |
|
|||||| ||||| ||||||||| || ||| | |||||| | |||| ||| ||||||||| |||||||||| |
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|
| T |
17616515 |
cttttacagatataattgaacaagtgcatt-tgacagggttgtgaaagagtaagagttatatcttgcaaat |
17616584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 105 - 426
Target Start/End: Complemental strand, 722990 - 722669
Alignment:
| Q |
105 |
aatcgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgct |
204 |
Q |
| |
|
||||||| ||||||||||| ||| | ||||| |||||| |||||||||||| ||||| |||||||| ||||| |||||||| || | ||||| |
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|
| T |
722990 |
aatcgatcaatgtaatggccttccttatgtgcattgagatgataagtaaagaattcaatttggtagcaaagattctcaagcattggtcaaacgttatgct |
722891 |
T |
|
| Q |
205 |
aaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaa |
304 |
Q |
| |
|
||||| || |||||||| | ||| |||||||| ||| ||| | |||||||| | |||||| | || |||| ||| || || |||||||||||| |
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|
| T |
722890 |
aaacatgctagctgatgaagctgtcttcatccttgattgcattgtgagttctccataccctaatgattgtgtaagggaaaagaaattaccattgattcaa |
722791 |
T |
|
| Q |
305 |
cacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagag |
404 |
Q |
| |
|
||||| |||| |||| ||| || |||||||||||||||||||||||||| |||||| || |||| |||| ||||||||| |||||| |||||| |
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|
| T |
722790 |
cacatattgcaccacaatgcgacgttcgagtttttccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagag |
722691 |
T |
|
| Q |
405 |
cttttaaggatatcattgaaca |
426 |
Q |
| |
|
| |||| ||||| |||||||| |
|
|
| T |
722690 |
cgtttacagatattattgaaca |
722669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 6e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 200 - 427
Target Start/End: Original strand, 11574488 - 11574715
Alignment:
| Q |
200 |
atgctaaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattga |
299 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||| || | |||||||| ||||||| || |||| | |||||||||||||||||| |
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|
| T |
11574488 |
atgctaagcaaccttgctgatgaggttgttgtcatcctgaattgcatcgaaatttctcattaccctaacacttttgtaggccaatcaaatttgccattga |
11574587 |
T |
|
| Q |
300 |
ttcaacacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgt |
399 |
Q |
| |
|
|||||||||| ||| | | ||| ||||||| ||||||| ||| |||||||||||||||| ||||||| |||||||||| ||||||||||| ||||| |
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|
| T |
11574588 |
ttcaacacatattgtgccgcaatttgacacttgagttttttcataaaaaacgcctcgaagtaatcaatgatgtcaccaagttaatcaatgatgtgtgtgt |
11574687 |
T |
|
| Q |
400 |
tagagcttttaaggatatcattgaacaa |
427 |
Q |
| |
|
|| ||||||| ||||||| ||||||||| |
|
|
| T |
11574688 |
tatagcttttgaggatattattgaacaa |
11574715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 636
Target Start/End: Complemental strand, 34145806 - 34145770
Alignment:
| Q |
600 |
agcttgagtattctatagtgtcacctaaatagcttgg |
636 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
34145806 |
agcttgagtattctatagtgtcacctaaatagcttgg |
34145770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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