View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5007_high_3 (Length: 435)
Name: NF5007_high_3
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5007_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 422
Target Start/End: Complemental strand, 30381824 - 30381421
Alignment:
| Q |
15 |
agaacaaacataccatgaattttaacactatgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30381824 |
agaacaaacataccatgaattttaacactatgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctt |
30381725 |
T |
|
| Q |
115 |
tttccatcttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcct |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30381724 |
tttccatcttaaaaagatcttttatgtccccaagcaaaatcctatatgaatttccttgaaagccttgttctcttaagagcttctctagcttctttggcct |
30381625 |
T |
|
| Q |
215 |
cagccacaacaaattcaacaccttccatgcccatatcaaaccaagtgttacaatgatgagaattatcccagaaacccattccattctcagtttgtaattg |
314 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30381624 |
cagccacaacaaactcaacaccttccatgcccatatcaaaccaagtgttacaatgatgagaattatcccagaaacccattccattctcagtttgtaattg |
30381525 |
T |
|
| Q |
315 |
gtgaagtagaaagagaatgtaacaatgaaacaaaaggaaatgcaagtgagtacatgtgaagtaacaatgaaccatatattttatagaatctatcttatcc |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
30381524 |
gtgaagtagaaagagaatgtaacaatgaaacaaaaggaaatgcaagtgagtacatgtgaagtaa----gaaccatagattttatagaatctatcttatcc |
30381429 |
T |
|
| Q |
415 |
ttttgttc |
422 |
Q |
| |
|
|||||||| |
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|
| T |
30381428 |
ttttgttc |
30381421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 30391288 - 30390953
Alignment:
| Q |
22 |
acataccatgaattttaacactatgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctttttccat |
121 |
Q |
| |
|
|||||||||||||| ||||||| | | | ||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||||||| |
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| T |
30391288 |
acataccatgaattctaacactttcattgtagtagggaatgacacgtggcgtgatatcatcggagaggttcatagatttggatttggcttccttttccat |
30391189 |
T |
|
| Q |
122 |
cttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagccac |
221 |
Q |
| |
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|||||| || || ||||| |||| |||| ||||||| ||| |||| || |||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
30391188 |
gttaaaatactccttcatgtctccaactaaaagcctatattgattccctttaagtccttgttctcttaagagcttctctagcttctttggcttcaaccat |
30391089 |
T |
|
| Q |
222 |
aacaaattcaacaccttccatgcccatatcaaaccaagtgttacaatgatgagaattatcccagaaacccattcca-ttctcagtttgtaattggtgaag |
320 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||| |||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||| |
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| T |
30391088 |
aacaaattcagcaccttccaagaccatatcaaac---------caatgatgagaattatgcctgaaacccattccatttctctgtttgtaattggtgaag |
30390998 |
T |
|
| Q |
321 |
taga---aagagaatgtaacaatgaaacaaaaggaaatgcaagtg |
362 |
Q |
| |
|
| | | ||||||||||||||||| |||||||| | |||||| |
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|
| T |
30390997 |
caaagtgtacagaatgtaacaatgaaataaaaggaagtacaagtg |
30390953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 23785620 - 23785732
Alignment:
| Q |
168 |
ccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgcccatatcaaaccaagtgttacaa |
267 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||||||| ||||||||| | ||||||| ||| ||||||| ||| |||||||| ||| ||| |
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| T |
23785620 |
ccttgaaggccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaataccctccatgcgtataccaaaccaaatgtcacag |
23785719 |
T |
|
| Q |
268 |
tgatgagaattat |
280 |
Q |
| |
|
||||||||||||| |
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|
| T |
23785720 |
tgatgagaattat |
23785732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 8382044 - 8382279
Alignment:
| Q |
45 |
tgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctttttccatcttaaaaagatctttaatgtccc |
144 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||| || || | ||||| ||| |||||||||| ||| |||||||| | ||| || | ||||| |
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|
| T |
8382044 |
tgttgaatgtagggaatgacacgagggattatatcatccgacagttccatgggtttggatttggctttctttcccatcttatatgaatccttcaagtccc |
8382143 |
T |
|
| Q |
145 |
caagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgc |
244 |
Q |
| |
|
|||||| || ||||| |||||||| | | | |||||||||| |||||||||||||||| |||||||| ||| ||| | | |||||| || |||||| |
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| T |
8382144 |
caagcacaagtctataagaatttccattacatccttgttctcgtaagagcttctctagcctctttggcttcaaccaaatccaattcagtactctccatgt |
8382243 |
T |
|
| Q |
245 |
ccatatcaaaccaagtgttacaatgatgagaattat |
280 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||| |
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|
| T |
8382244 |
gtatactaaaccaagtgttacagtgatgagaattat |
8382279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 23766112 - 23766000
Alignment:
| Q |
168 |
ccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgcccatatcaaaccaagtgttacaa |
267 |
Q |
| |
|
||||||| |||||||||||||| |||||||| | |||||||||| ||||||||| | ||||||| ||| ||||||| ||| |||||||| ||| ||| |
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| T |
23766112 |
ccttgaaggccttgttctcttaaaagcttctccatcttctttggcttcagccacatccaattcaataccctccatgcgtataccaaaccaaatgtcacag |
23766013 |
T |
|
| Q |
268 |
tgatgagaattat |
280 |
Q |
| |
|
||||||||||||| |
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|
| T |
23766012 |
tgatgagaattat |
23766000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 23788833 - 23788730
Alignment:
| Q |
177 |
ccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgcccatatcaaaccaagtgttacaatgatgagaa |
276 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||| | ||||||| || ||||| | ||| |||||||| ||| ||| ||||||||| |
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|
| T |
23788833 |
ccttgttctcttaaaagcttctctatcttctttggcttcagccacatccaattcaatgccctccatacgtataccaaaccaaatgtcacagtgatgagaa |
23788734 |
T |
|
| Q |
277 |
ttat |
280 |
Q |
| |
|
|||| |
|
|
| T |
23788733 |
ttat |
23788730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 30428077 - 30427902
Alignment:
| Q |
75 |
atatcatcggagagattcatggattttgatttggcttctttttccatcttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaa |
174 |
Q |
| |
|
|||||||| || |||||||| | ||| ||| | ||||| ||| |||||||| |||||| || ||||| |||| |||| |||||||||||| |||| | |
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|
| T |
30428077 |
atatcatcagaaagattcataggtttagatgttgcttcctttctcatcttaagaagatcattcatgtctccaactaaaagcctatatgaattccctttta |
30427978 |
T |
|
| Q |
175 |
aaccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgcccatat |
250 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| ||| ||| ||||||| | | |||||||| |||| |
|
|
| T |
30427977 |
gtccttgttctcttaggaatttctctagcttctttggcttcaaccataaccaattcaaaatcctccatgccaatat |
30427902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 250
Target Start/End: Complemental strand, 30465880 - 30465705
Alignment:
| Q |
75 |
atatcatcggagagattcatggattttgatttggcttctttttccatcttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaa |
174 |
Q |
| |
|
|||||||| || |||||||| | ||| ||| | ||||| ||| |||||||| |||||| || ||||| |||| |||| ||||||||||||||||| | |
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|
| T |
30465880 |
atatcatcagaaagattcataggtttagatgttgcttcctttctcatcttaagaagatcattcatgtctccaactaaaagcctatatgaatttcctttta |
30465781 |
T |
|
| Q |
175 |
aaccttgttctcttaagagcttctctagcttctttggcctcagccacaacaaattcaacaccttccatgcccatat |
250 |
Q |
| |
|
||||||||||||| | ||| |||||||| |||||| ||| ||| ||| ||||||| | | ||||||||||||| |
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|
| T |
30465780 |
gtccttgttctcttagcaacttttctagcttttttggcttcaaccataaccaattcaaaatcctccatgcccatat |
30465705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 30421840 - 30421709
Alignment:
| Q |
119 |
catcttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagc |
218 |
Q |
| |
|
|||||||| |||||| || ||||| |||| |||| |||||||||||| |||| | ||||||||||||| || |||||||||||||||||| ||| | |
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|
| T |
30421840 |
catcttaagaagatcattcatgtctccaactaaaagcctatatgaattcccttttagtccttgttctcttaggaatttctctagcttctttggcttcaac |
30421741 |
T |
|
| Q |
219 |
cacaacaaattcaacaccttccatgcccatat |
250 |
Q |
| |
|
|| ||| ||||||| | | |||||||| |||| |
|
|
| T |
30421740 |
cataaccaattcaaaatcctccatgccaatat |
30421709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 30472882 - 30472751
Alignment:
| Q |
119 |
catcttaaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagc |
218 |
Q |
| |
|
|||||||| ||||||| | ||||| |||| |||| |||||||||||| |||| | ||||||||||||| | |||||||||||||||||| ||| | |
|
|
| T |
30472882 |
catcttaagaagatctcttatgtctccaactaaaagcctatatgaattcccttttagtccttgttctcttagaaatttctctagcttctttggcttcaac |
30472783 |
T |
|
| Q |
219 |
cacaacaaattcaacaccttccatgcccatat |
250 |
Q |
| |
|
|| ||| |||||| | ||||||||||||||| |
|
|
| T |
30472782 |
cataaccaattcagaatcttccatgcccatat |
30472751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 280
Target Start/End: Original strand, 41631658 - 41631913
Alignment:
| Q |
25 |
taccatgaattttaacactatgttggatgtagggaattacacgtggtgttatatcatcggagagattcatggattttgatttggcttctttttccatctt |
124 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || | ||||| ||||||||||| |
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|
| T |
41631658 |
taccatgaattttaacattgtgttggatgtagggaattacacgtggcattatatcatcggtgagattcatggatttagacctagcttccttttccatctt |
41631757 |
T |
|
| Q |
125 |
aaaaagatctttaatgtccccaagcaaaatcctatatgaatttccttgaaaaccttgttctcttaagagcttctctagcttctttggcctcagccacaac |
224 |
Q |
| |
|
|| |||||| || ||||| ||| |||||||||||||| ||| ||||||| ||||||||||||||| || |||||||||||||||||||| | ||||||| |
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|
| T |
41631758 |
aagaagatcctttatgtctccatacaaaatcctatatggattcccttgaagaccttgttctcttaacagtttctctagcttctttggccttaaccacaac |
41631857 |
T |
|
| Q |
225 |
aaattcaacaccttccatgcccatatcaaaccaagtgttacaatgatgagaattat |
280 |
Q |
| |
|
|||||| | | ||||||||||||||||||||| ||| ||||||||| ||||||| |
|
|
| T |
41631858 |
caattcagtatcctccatgcccatatcaaaccaactgtcacaatgatgggaattat |
41631913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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