View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5007_low_1 (Length: 675)

Name: NF5007_low_1
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5007_low_1
NF5007_low_1
[»] chr6 (43 HSPs)
chr6 (18-365)||(26828594-26828941)
chr6 (510-627)||(31248544-31248662)
chr6 (507-627)||(13883687-13883809)
chr6 (507-627)||(30987353-30987473)
chr6 (510-627)||(13878951-13879070)
chr6 (304-511)||(26641396-26641610)
chr6 (304-511)||(26747362-26747576)
chr6 (510-627)||(35201157-35201274)
chr6 (510-627)||(3577338-3577460)
chr6 (510-627)||(16786147-16786264)
chr6 (510-627)||(25941878-25942000)
chr6 (510-613)||(25465754-25465858)
chr6 (510-627)||(26887077-26887195)
chr6 (510-607)||(17694701-17694799)
chr6 (527-627)||(17038449-17038550)
chr6 (510-627)||(22351704-22351826)
chr6 (510-612)||(33216055-33216159)
chr6 (129-263)||(26641207-26641334)
chr6 (129-263)||(26747173-26747300)
chr6 (522-612)||(12166010-12166102)
chr6 (510-627)||(22342652-22342774)
chr6 (509-612)||(13467317-13467422)
chr6 (510-612)||(19701757-19701860)
chr6 (528-612)||(26643399-26643483)
chr6 (528-612)||(26749365-26749449)
chr6 (514-587)||(5165697-5165772)
chr6 (20-131)||(26640893-26641006)
chr6 (20-131)||(26746859-26746972)
chr6 (512-627)||(17066057-17066179)
chr6 (510-562)||(10584359-10584413)
chr6 (554-587)||(5165772-5165805)
chr6 (139-208)||(26890864-26890933)
chr6 (99-131)||(26853950-26853982)
chr6 (508-562)||(5273053-5273108)
chr6 (87-126)||(27652025-27652064)
chr6 (508-563)||(3629709-3629765)
chr6 (86-136)||(27422372-27422422)
chr6 (86-120)||(27713841-27713875)
chr6 (81-131)||(31289527-31289577)
chr6 (87-131)||(26631735-26631779)
chr6 (87-131)||(26737710-26737754)
chr6 (99-131)||(26966392-26966424)
chr6 (99-127)||(27713930-27713958)
[»] scaffold0006 (1 HSPs)
scaffold0006 (510-627)||(231328-231445)
[»] chr8 (24 HSPs)
chr8 (510-627)||(28895715-28895832)
chr8 (510-627)||(28890978-28891095)
chr8 (513-627)||(4812336-4812451)
chr8 (510-627)||(16752374-16752493)
chr8 (510-627)||(16757110-16757229)
chr8 (510-627)||(28328120-28328239)
chr8 (510-627)||(28332843-28332962)
chr8 (510-627)||(23179410-23179531)
chr8 (510-627)||(25684853-25684972)
chr8 (510-627)||(9020957-9021079)
chr8 (508-627)||(3276504-3276628)
chr8 (509-608)||(29554704-29554803)
chr8 (508-627)||(591005-591128)
chr8 (510-612)||(17799278-17799381)
chr8 (528-607)||(21034100-21034181)
chr8 (510-627)||(26268084-26268207)
chr8 (510-581)||(4823551-4823622)
chr8 (509-627)||(30423420-30423542)
chr8 (522-612)||(33032879-33032971)
chr8 (85-131)||(29269792-29269838)
chr8 (512-564)||(28228790-28228842)
chr8 (510-613)||(2266936-2267039)
chr8 (510-562)||(3874435-3874487)
chr8 (510-562)||(28251410-28251463)
[»] scaffold0131 (1 HSPs)
scaffold0131 (510-627)||(17706-17824)
[»] chr7 (23 HSPs)
chr7 (510-627)||(25405627-25405745)
chr7 (510-627)||(7070008-7070126)
chr7 (507-627)||(3319866-3319988)
chr7 (509-627)||(8378356-8378473)
chr7 (509-627)||(7075009-7075128)
chr7 (510-627)||(25351561-25351683)
chr7 (510-627)||(3324637-3324756)
chr7 (510-627)||(15540844-15540963)
chr7 (509-613)||(30247198-30247304)
chr7 (509-627)||(44143721-44143843)
chr7 (510-626)||(2075320-2075436)
chr7 (510-613)||(7464365-7464469)
chr7 (512-613)||(34546734-34546835)
chr7 (510-612)||(44016514-44016618)
chr7 (510-612)||(25357274-25357378)
chr7 (509-612)||(2121128-2121230)
chr7 (512-612)||(25410361-25410463)
chr7 (510-627)||(44010603-44010726)
chr7 (510-612)||(42006888-42006992)
chr7 (512-592)||(21369888-21369970)
chr7 (510-568)||(44512363-44512423)
chr7 (510-562)||(24748981-24749035)
chr7 (510-562)||(443989-444044)
[»] chr4 (29 HSPs)
chr4 (510-627)||(15831360-15831478)
chr4 (510-627)||(11853778-11853897)
chr4 (510-627)||(15312526-15312649)
chr4 (510-627)||(18587176-18587298)
chr4 (510-627)||(16688794-16688916)
chr4 (510-627)||(4555915-4556036)
chr4 (510-610)||(4570320-4570420)
chr4 (510-627)||(7050125-7050246)
chr4 (510-607)||(8529502-8529600)
chr4 (510-627)||(4558516-4558639)
chr4 (510-627)||(15317167-15317290)
chr4 (510-607)||(16489583-16489681)
chr4 (510-627)||(55822472-55822591)
chr4 (510-611)||(4885100-4885202)
chr4 (510-612)||(47566717-47566821)
chr4 (509-612)||(36771621-36771726)
chr4 (515-612)||(36769704-36769803)
chr4 (510-564)||(31300677-31300732)
chr4 (510-585)||(4874336-4874410)
chr4 (130-259)||(18682666-18682788)
chr4 (579-627)||(31300629-31300681)
chr4 (510-564)||(32273806-32273860)
chr4 (509-613)||(25613809-25613915)
chr4 (509-562)||(47563194-47563249)
chr4 (510-568)||(16185686-16185746)
chr4 (510-590)||(16639075-16639154)
chr4 (510-562)||(18709003-18709056)
chr4 (510-562)||(40637513-40637566)
chr4 (510-597)||(16631425-16631511)
[»] chr3 (31 HSPs)
chr3 (510-627)||(6303524-6303642)
chr3 (510-627)||(10099924-10100042)
chr3 (510-627)||(10093923-10094041)
chr3 (510-627)||(10200805-10200923)
chr3 (510-627)||(54193439-54193557)
chr3 (510-626)||(27544504-27544619)
chr3 (510-627)||(54188723-54188841)
chr3 (510-627)||(22625829-22625947)
chr3 (510-627)||(10897214-10897336)
chr3 (509-627)||(5858753-5858875)
chr3 (510-627)||(11079724-11079845)
chr3 (510-627)||(10594883-10595006)
chr3 (509-614)||(10949114-10949219)
chr3 (510-612)||(29897527-29897631)
chr3 (510-627)||(47882738-47882859)
chr3 (510-614)||(20031170-20031276)
chr3 (516-627)||(47878033-47878147)
chr3 (510-612)||(29913805-29913908)
chr3 (509-627)||(3330098-3330222)
chr3 (510-607)||(10612627-10612725)
chr3 (509-613)||(4535842-4535947)
chr3 (510-615)||(48390152-48390260)
chr3 (510-627)||(27761840-27761962)
chr3 (542-627)||(16462406-16462495)
chr3 (510-602)||(38003103-38003195)
chr3 (522-592)||(7418306-7418378)
chr3 (511-612)||(13893686-13893789)
chr3 (510-568)||(27420998-27421055)
chr3 (509-568)||(16997150-16997210)
chr3 (510-562)||(36871149-36871202)
chr3 (517-562)||(53468302-53468349)
[»] chr1 (13 HSPs)
chr1 (510-627)||(9521938-9522056)
chr1 (510-627)||(2232807-2232926)
chr1 (510-627)||(9526679-9526796)
chr1 (510-627)||(2393133-2393253)
chr1 (510-612)||(21353197-21353301)
chr1 (510-627)||(2401074-2401194)
chr1 (516-627)||(4144543-4144660)
chr1 (510-615)||(25134293-25134399)
chr1 (510-562)||(25860252-25860306)
chr1 (509-562)||(13215465-13215519)
chr1 (533-587)||(9314522-9314574)
chr1 (510-590)||(3090960-3091039)
chr1 (508-559)||(13762225-13762277)
[»] scaffold1050 (1 HSPs)
scaffold1050 (510-627)||(2919-3037)
[»] chr2 (19 HSPs)
chr2 (510-627)||(2736417-2736536)
chr2 (510-613)||(27517491-27517594)
chr2 (510-627)||(45679935-45680054)
chr2 (509-627)||(22712373-22712495)
chr2 (510-627)||(22717083-22717204)
chr2 (510-627)||(33670817-33670936)
chr2 (522-627)||(2741153-2741260)
chr2 (510-627)||(39680257-39680377)
chr2 (510-627)||(39687201-39687321)
chr2 (512-613)||(12781075-12781177)
chr2 (510-625)||(17943747-17943867)
chr2 (510-613)||(38191242-38191345)
chr2 (510-627)||(17462650-17462767)
chr2 (510-627)||(20054610-20054735)
chr2 (510-627)||(20049866-20049991)
chr2 (510-627)||(37170607-37170729)
chr2 (512-627)||(30479203-30479322)
chr2 (510-564)||(28458693-28458751)
chr2 (510-563)||(7462789-7462844)
[»] chr5 (22 HSPs)
chr5 (510-627)||(2297849-2297965)
chr5 (505-627)||(22673042-22673168)
chr5 (510-627)||(35385303-35385421)
chr5 (510-627)||(1171024-1171142)
chr5 (510-627)||(42238466-42238588)
chr5 (510-607)||(1240662-1240760)
chr5 (532-627)||(25452705-25452802)
chr5 (512-613)||(28786626-28786728)
chr5 (532-627)||(25445706-25445803)
chr5 (510-612)||(40222993-40223097)
chr5 (508-612)||(11962285-11962390)
chr5 (516-613)||(17841110-17841207)
chr5 (509-612)||(20437145-20437250)
chr5 (510-612)||(16093144-16093249)
chr5 (510-592)||(10627611-10627695)
chr5 (510-613)||(31782311-31782413)
chr5 (510-562)||(37705626-37705680)
chr5 (514-562)||(17818338-17818388)
chr5 (510-562)||(10528937-10528990)
chr5 (528-592)||(26406340-26406402)
chr5 (528-569)||(34033438-34033479)
chr5 (509-556)||(15552638-15552686)
[»] scaffold0256 (1 HSPs)
scaffold0256 (510-627)||(16540-16656)
[»] scaffold0209 (1 HSPs)
scaffold0209 (510-589)||(16885-16965)
[»] scaffold0349 (2 HSPs)
scaffold0349 (86-120)||(18069-18103)
scaffold0349 (99-127)||(17986-18014)
[»] scaffold0267 (1 HSPs)
scaffold0267 (509-562)||(421-474)
[»] scaffold0003 (1 HSPs)
scaffold0003 (86-136)||(64941-64991)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 26828594 - 26828941
Alignment:
Q  18 atgaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtagcagcaaca 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  26828594 atgaagcatggaggaggacgaggttttcaccaatccatacggaaagagtaaatcagataaggatcagattttctgagacacaacttgtgtagaagcaata 26828693  T
Q  118 acactgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatc 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26828694 acgctgtatggctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaaatcacaatc 26828793  T
Q  218 tatgttcaatgatgtgaacttccatttcaaaaagttggatgcatagnnnnnnnnnnnnnnnnnnnnnnnctcagttcaagtgtttgattatggtacttca 317  Q
    |||||||||||| || ||||||||||||||||||||||||||||||                       |||||||||||||||||||||||||||||||    
T  26828794 tatgttcaatgacgtaaacttccatttcaaaaagttggatgcatagtttatatattttttttttattttctcagttcaagtgtttgattatggtacttca 26828893  T
Q  318 atgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26828894 atgcaatgtagatagcgtttcaaaccaagtatagtcacactccagagg 26828941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 31248544 - 31248662
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31248544 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 31248643  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  31248644 aaaaacagcaagagataaa 31248662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 507 - 627
Target Start/End: Complemental strand, 13883809 - 13883687
Alignment:
Q  507 ttgtgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcc 604  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13883809 ttgtgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaaacgggtagcaaataatcc 13883710  T
Q  605 aaacaaaaacagcaagagataaa 627  Q
    |||||||||||||||||||||||    
T  13883709 aaacaaaaacagcaagagataaa 13883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 30987353 - 30987473
Alignment:
Q  507 ttgtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30987353 ttgtgttgtgaattcgacgaggaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagtgggtagcaaataatccaa 30987452  T
Q  607 acaaaaacagcaagagataaa 627  Q
    |||||||||||||||||||||    
T  30987453 acaaaaacagcaagagataaa 30987473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 13879070 - 13878951
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13879070 tgttgtgaattcgttgagaaaaaccacaccaaaaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 13878971  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||||||||    
T  13878970 caaaaacagcaagagataaa 13878951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 304 - 511
Target Start/End: Original strand, 26641396 - 26641610
Alignment:
Q  304 attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactcca--gagggagatttccacatcaaagaaagaaaatgaaa---ac 398  Q
    ||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||| |  |||||||||||||||||||||| || ||||  |||   |     
T  26641396 attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat 26641495  T
Q  399 atccaaatgtgt--ttgtaatgtgaggagtactagcagtaacacagcctttaatgcacatttaagtttataattctgggagatgagttttggagtgagga 496  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||||||  | |||||  |||||||||||||||||| |||||||||||||||||    
T  26641496 atccaaatgtgtgtttgtattgtgaggagtactagcaataacacagcctttaacacgcatttgcgtttataattctgggagaagagttttggagtgagga 26641595  T
Q  497 tagtaagaacttgtg 511  Q
    |||||||||| ||||    
T  26641596 tagtaagaacatgtg 26641610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 304 - 511
Target Start/End: Original strand, 26747362 - 26747576
Alignment:
Q  304 attatggtacttcaatgcaatgtagatagcgtttcaaaccaagtatagtcacactcca--gagggagatttccacatcaaagaaagaaaatgaaa---ac 398  Q
    ||||||||| ||||||| ||||||||| || ||||||| ||||||||||||||||| |  |||||||||||||||||||||| || ||||  |||   |     
T  26747362 attatggtatttcaatgtaatgtagattgcatttcaaaacaagtatagtcacactctatagagggagatttccacatcaaaggaaaaaaagtaaataaat 26747461  T
Q  399 atccaaatgtgt--ttgtaatgtgaggagtactagcagtaacacagcctttaatgcacatttaagtttataattctgggagatgagttttggagtgagga 496  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||||||  | |||||  |||||||||||||||||| |||||||||||||||||    
T  26747462 atccaaatgtgtgtttgtattgtgaggagtactagcaataacacagcctttaacacgcatttgcgtttataattctgggagaagagttttggagtgagga 26747561  T
Q  497 tagtaagaacttgtg 511  Q
    |||||||||| ||||    
T  26747562 tagtaagaacatgtg 26747576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 35201157 - 35201274
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35201157 tgttgtgaattcgttgagaaaaccacactaataaaaacttgatgcgtggagcaaattaatac-aagtaatcaaatcaagcgggtagcaaataatccaaac 35201255  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  35201256 aaaaacagcaagagataaa 35201274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 3577338 - 3577460
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3577338 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 3577437  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  3577438 aaaagtaaacagcaagagataaa 3577460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 16786264 - 16786147
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16786264 tgttgtgaatttgttgagaaaaccacaacaataagacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 16786165  T
Q  610 aaaacagcaagagataaa 627  Q
    |||||| ||||| |||||    
T  16786164 aaaacaacaagaaataaa 16786147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 25942000 - 25941878
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25942000 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggaacaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 25941901  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  25941900 aaaaataaacagcaagagataaa 25941878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 510 - 613
Target Start/End: Original strand, 25465754 - 25465858
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25465754 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgtgtagcaaataatccaaac 25465853  T
Q  609 aaaaa 613  Q
    |||||    
T  25465854 aaaaa 25465858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 26887077 - 26887195
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  26887077 tgttgtgaattcgtcgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaatatcaagtaatcaaaacaagcgggtagcaattaatccaaac 26887176  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||| ||||||||||||||    
T  26887177 aaaaccagcaagagataaa 26887195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 510 - 607
Target Start/End: Original strand, 17694701 - 17694799
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17694701 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaataccaagtaatcaaatcaagcggatagcaaataatccaaa 17694799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 527 - 627
Target Start/End: Complemental strand, 17038550 - 17038449
Alignment:
Q  527 gaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacagcaagagata 625  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17038550 gaaaatcacaccaataaaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacagcaagaaata 17038451  T
Q  626 aa 627  Q
    ||    
T  17038450 aa 17038449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 22351704 - 22351826
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa-c 608  Q
    ||||||||||||||||  |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  22351704 tgttgtgaattcgttgtaaaaatcacaccaataaaacttgatgtgtggagcaaattaataccaagtaatcaaatcaagcgggtaacaaataatccaaaac 22351803  T
Q  609 aaaa----acagcaagagataaa 627  Q
    ||||    |||||||||||||||    
T  22351804 aaaagtaaacagcaagagataaa 22351826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 33216159 - 33216055
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||| |||  ||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33216159 tgttgtgaattccttgtaaaaaccacaccaataaaaaacttgatgcgtggagcaaattaataccaagtaatcatatcaagcgggtagcaaataatccaaa 33216060  T
Q  608 caaaa 612  Q
    |||||    
T  33216059 caaaa 33216055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 26641207 - 26641334
Alignment:
Q  129 ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg 228  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||       ||||||||||  ||||||||    
T  26641207 ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg 26641299  T
Q  229 atgtgaacttccatttcaaaaagttggatgcatag 263  Q
    |||||||||||||||||||||| ||||||||||||    
T  26641300 atgtgaacttccatttcaaaaatttggatgcatag 26641334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 26747173 - 26747300
Alignment:
Q  129 ctcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatg 228  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||       ||||||||||  ||||||||    
T  26747173 ctcatgttcatatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttc-------atcacaatctcagttcaatg 26747265  T
Q  229 atgtgaacttccatttcaaaaagttggatgcatag 263  Q
    |||||||||||||||||||||| ||||||||||||    
T  26747266 atgtgaacttccatttcaaaaatttggatgcatag 26747300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 522 - 612
Target Start/End: Original strand, 12166010 - 12166102
Alignment:
Q  522 gttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaa 612  Q
    |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12166010 gttgtgaaaaccacaccaataataaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaacaaaa 12166102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 22342652 - 22342774
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcca-aac 608  Q
    ||||||||||||||||  |||| ||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  22342652 tgttgtgaattcgttgtaaaaatcacaccaataaaacttgatgtatggagcaaattaataccaaataatcaaatcaagcgggtagcaaataatccataac 22342751  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  22342752 aaaagtaaacagcaagagataaa 22342774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 509 - 612
Target Start/End: Original strand, 13467317 - 13467422
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaac--ttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||| |||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||| |||||||||||| || |||    
T  13467317 gtgttgtgaattcgttgtgaaaaccacaccaataaaaaatttgatgcgtggagtaaattaataccaagtaatcaaatcaaacgggtagcaaatgattcaa 13467416  T
Q  607 acaaaa 612  Q
    ||||||    
T  13467417 acaaaa 13467422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 19701757 - 19701860
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||| ||||    
T  19701757 tgttgtgaattcgttgtgaaaaccacaccaataataaacttgatgcgtggaacaaattaa-accaagtaatcaaatcaaacggatagcaaataattcaaa 19701855  T
Q  608 caaaa 612  Q
    |||||    
T  19701856 caaaa 19701860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 528 - 612
Target Start/End: Complemental strand, 26643483 - 26643399
Alignment:
Q  528 aaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaa 612  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||    
T  26643483 aaaagcacaccaataaaacttgatgcgtggagcaaattaataccaagtaatgaaatcaagcggatagaaaataattcaaacaaaa 26643399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 528 - 612
Target Start/End: Complemental strand, 26749449 - 26749365
Alignment:
Q  528 aaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaa 612  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |||||||||    
T  26749449 aaaagcacaccaataaaacttgatgcgtggagcaaattaataccaagtaatgaaatcaagcggatagaaaataattcaaacaaaa 26749365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 514 - 587
Target Start/End: Original strand, 5165697 - 5165772
Alignment:
Q  514 gtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaag 587  Q
    |||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5165697 gtgaattcgttgtgaaaaacacaccaataataaacttgatgcgtggagcaaattaataccaagtaatcaaatcaag 5165772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 26640893 - 26641006
Alignment:
Q  20 gaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggat--cagattttctgagacacaacttgtgtagcagcaaca 117  Q
    |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||||  |||| ||||||||||| |||||||||||  ||||||    
T  26640893 gaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaacttgtgtagacgcaaca 26640992  T
Q  118 acactgtatggctc 131  Q
    ||||||||||||||    
T  26640993 acactgtatggctc 26641006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 26746859 - 26746972
Alignment:
Q  20 gaagcatggaggaggacgaggttttcaccaatccgtacggaaagagtaaatcagataaggat--cagattttctgagacacaacttgtgtagcagcaaca 117  Q
    |||| |||||||| || | | |||||| |||||| ||| || ||||||||||||||||||||  |||| ||||||||||| |||||||||||  ||||||    
T  26746859 gaagaatggaggatgatgtgattttcatcaatccttacagagagagtaaatcagataaggatatcagagtttctgagacagaacttgtgtagacgcaaca 26746958  T
Q  118 acactgtatggctc 131  Q
    ||||||||||||||    
T  26746959 acactgtatggctc 26746972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 512 - 627
Target Start/End: Complemental strand, 17066179 - 17066057
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaa-ataatccaaac 608  Q
    |||||||||| ||| |||||||||||||||||||  | |||||||||||| ||||||| | |||| ||||||||||||| |||  ||| ||||| |||||    
T  17066179 ttgtgaattcattgtgaaaaccacaccaataaaaaacctgatgcgtggagtaaattaaaatcaagcaatcaaatcaagctggtgacaatataattcaaac 17066080  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  17066079 aaaaataaacagcaagagataaa 17066057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 10584413 - 10584359
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||||||| |||||||||||||||||||  |||||||||| |||||||||    
T  10584413 tgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 10584359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 587
Target Start/End: Original strand, 5165772 - 5165805
Alignment:
Q  554 gtggagcaaattaataccaagtaatcaaatcaag 587  Q
    ||||||||||||||||||||||||||||||||||    
T  5165772 gtggagcaaattaataccaagtaatcaaatcaag 5165805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 26890864 - 26890933
Alignment:
Q  139 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaa 208  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| ||||||||| ||||||    
T  26890864 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 26890933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 26853950 - 26853982
Alignment:
Q  99 aacttgtgtagcagcaacaacactgtatggctc 131  Q
    |||||||||||||||||||||||||||||||||    
T  26853950 aacttgtgtagcagcaacaacactgtatggctc 26853982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 5273053 - 5273108
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||||||| ||| |||| ||||||||||| ||||||||| |||||||||    
T  5273053 tgtgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggagcaa 5273108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 27652064 - 27652025
Alignment:
Q  87 tttctgagacacaacttgtgtagcagcaacaacactgtat 126  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  27652064 tttctgagacagaacttgcgtagcagcaacaacactgtat 27652025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 3629709 - 3629765
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaaa 563  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||||    
T  3629709 tgtgttgtgaattcgatgagaaaa-cacaccaataacaaacttgatgtgtggagcaaa 3629765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 27422422 - 27422372
Alignment:
Q  86 ttttctgagacacaacttgtgtagcagcaacaacactgtatggctcatgta 136  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  27422422 ttttttgagacagaacttgagtagcagaaacaacactgtatggctcttgta 27422372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 27713875 - 27713841
Alignment:
Q  86 ttttctgagacacaacttgtgtagcagcaacaaca 120  Q
    |||||||||||| ||||||||||||||||||||||    
T  27713875 ttttctgagacagaacttgtgtagcagcaacaaca 27713841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 31289527 - 31289577
Alignment:
Q  81 tcagattttctgagacacaacttgtgtagcagcaacaacactgtatggctc 131  Q
    ||||| |||| |||||| ||| |||||||||| ||||||||||||||||||    
T  31289527 tcagagtttccgagacagaacctgtgtagcagaaacaacactgtatggctc 31289577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 26631735 - 26631779
Alignment:
Q  87 tttctgagacacaacttgtgtagcagcaacaacactgtatggctc 131  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  26631735 tttccgagacagaacttgtgtagctgcaacaacattgtatggctc 26631779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 26737710 - 26737754
Alignment:
Q  87 tttctgagacacaacttgtgtagcagcaacaacactgtatggctc 131  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||    
T  26737710 tttccgagacagaacttgtgtagctgcaacaacattgtatggctc 26737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 26966392 - 26966424
Alignment:
Q  99 aacttgtgtagcagcaacaacactgtatggctc 131  Q
    |||||||||||||||||||| ||||||||||||    
T  26966392 aacttgtgtagcagcaacaaaactgtatggctc 26966424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 27713958 - 27713930
Alignment:
Q  99 aacttgtgtagcagcaacaacactgtatg 127  Q
    |||||||||||||||||||||||||||||    
T  27713958 aacttgtgtagcagcaacaacactgtatg 27713930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 231445 - 231328
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  231445 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 231346  T
Q  610 aaaacagcaagagataaa 627  Q
    ||||||||||||||||||    
T  231345 aaaacagcaagagataaa 231328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 7e-60; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 28895832 - 28895715
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28895832 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 28895733  T
Q  610 aaaacagcaagagataaa 627  Q
    ||||||||||||||||||    
T  28895732 aaaacagcaagagataaa 28895715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 28891095 - 28890978
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28891095 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 28890996  T
Q  610 aaaacagcaagagataaa 627  Q
    |||||||||| |||||||    
T  28890995 aaaacagcaacagataaa 28890978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 513 - 627
Target Start/End: Original strand, 4812336 - 4812451
Alignment:
Q  513 tgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaa 611  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4812336 tgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaa 4812435  T
Q  612 aacagcaagagataaa 627  Q
    ||||||||||||||||    
T  4812436 aacagcaagagataaa 4812451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 16752374 - 16752493
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16752374 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 16752473  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||||||||    
T  16752474 caaaaacagcaagagataaa 16752493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 16757110 - 16757229
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16757110 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 16757209  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||||||||    
T  16757210 caaaaacagcaagagataaa 16757229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 28328239 - 28328120
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28328239 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 28328140  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||| ||||    
T  28328139 caaaaacagcaagagttaaa 28328120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 28332962 - 28332843
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28332962 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 28332863  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||| ||||    
T  28332862 caaaaacagcaagagttaaa 28332843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 23179410 - 23179531
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23179410 tgttgtgaattcgttgtgaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaaca 23179509  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  23179510 aaagtaaacagcaagagataaa 23179531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 25684972 - 25684853
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  25684972 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaaacaagtgggtagcaaataatccaaac 25684873  T
Q  609 a-aaaacagcaagagataaa 627  Q
    | |||||||||||| |||||    
T  25684872 aaaaaacagcaagaaataaa 25684853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 9020957 - 9021079
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9020957 tgttgtgaatttgtcgagaaaaccacaccaataaagacttaatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 9021056  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  9021057 aaaagtaaacagcaagagataaa 9021079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 508 - 627
Target Start/End: Complemental strand, 3276628 - 3276504
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    |||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3276628 tgtgttgtgaattccttgttaaaaccacaccaataaaaacttgatgcgtggagcaaattaataacaagtaatcaaatcaagcgggtagcaaataatccaa 3276529  T
Q  607 acaa----aaacagcaagagataaa 627  Q
    ||||    |||||||||||||||||    
T  3276528 acaaaagtaaacagcaagagataaa 3276504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 509 - 608
Target Start/End: Original strand, 29554704 - 29554803
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||    
T  29554704 gtgttgtgaattcgttgagaaaaccacaccaataatacttgatgcgtggagtaaattaatatcaagtaatcaaatcaagctggtagcaaataatccaaac 29554803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 508 - 627
Target Start/End: Complemental strand, 591128 - 591005
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaataaaactt-gatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcc-- 604  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||      
T  591128 tgtgttgtgaattcgttgagaaaaccacaccaataaaaatttgatgcgtggaaaaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 591029  T
Q  605 -aaacaaaaacagcaagagataaa 627  Q
     |||  ||||||||||||||||||    
T  591028 taaaataaaacagcaagagataaa 591005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 17799278 - 17799381
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||| ||||||||||||||||||| ||||||  ||| || |||||||||||||||||||||||||||||||||||||||||| |||||    
T  17799278 tgttgtgaattcgttgtgaaaaccacaccaataaaaacttgatatgtgaagtaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaac 17799377  T
Q  609 aaaa 612  Q
    ||||    
T  17799378 aaaa 17799381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 528 - 607
Target Start/End: Complemental strand, 21034181 - 21034100
Alignment:
Q  528 aaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21034181 aaaaccacaccaataaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 21034100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 26268084 - 26268207
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||| ||||    
T  26268084 tgttgtgaattcgttctgaaaaccacaccaataataaacttgatgcgtggagcaaattaataccatgtaattaaatcaagctggtagaaaataattcaaa 26268183  T
Q  608 caa----aaacagcaagagataaa 627  Q
    |||    |||||||||||||||||    
T  26268184 caaaagtaaacagcaagagataaa 26268207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 581
Target Start/End: Original strand, 4823551 - 4823622
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaa 581  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4823551 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgtgtggagaaaattaataccaagtaatcaa 4823622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 509 - 627
Target Start/End: Complemental strand, 30423542 - 30423420
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaa-ataatccaaa 607  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||  ||| ||||| ||||    
T  30423542 gtgttgtgaattcattgcaaaaatcacaccaataaaacttgatgtgtggagcaaa-taaaaccaagcaatcaaatcaagcgggtgacaatataattcaaa 30423444  T
Q  608 caa----aaacagcaagagataaa 627  Q
    |||    |||||||||||||||||    
T  30423443 caaaaataaacagcaagagataaa 30423420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 612
Target Start/End: Complemental strand, 33032971 - 33032879
Alignment:
Q  522 gttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaa 612  Q
    |||| |||||| ||||||||||||  |||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||    
T  33032971 gttgtgaaaacgacaccaataaaaaacttgatgcatagagcaaattaatatcaagtaatcaaatcaagcgagtagcaaataattaaaacaaaa 33032879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 29269838 - 29269792
Alignment:
Q  85 attttctgagacacaacttgtgtagcagcaacaacactgtatggctc 131  Q
    |||||||||  || |||||||||||||||||||||||||||||||||    
T  29269838 attttctgaagcagaacttgtgtagcagcaacaacactgtatggctc 29269792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 564
Target Start/End: Complemental strand, 28228842 - 28228790
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaat 564  Q
    ||||||||||||||  |||| |||||||||||||||||||| |||||| ||||    
T  28228842 ttgtgaattcgttgtaaaaatcacaccaataaaacttgatgtgtggagaaaat 28228790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 613
Target Start/End: Original strand, 2266936 - 2267039
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata-aaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaat-aatccaaa 607  Q
    ||||||||||||||||  |||| |||||||||| |||||||||| || ||||||| ||| |||||  ||||||||||||| |||  ||||| ||| ||||    
T  2266936 tgttgtgaattcgttgcaaaaatcacaccaatataaacttgatgtgt-gagcaaa-taaaaccaaacaatcaaatcaagcaggtgacaaataaattcaaa 2267033  T
Q  608 caaaaa 613  Q
    ||||||    
T  2267034 caaaaa 2267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 3874487 - 3874435
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||    
T  3874487 tgttgtgaattcgttga-aaaatcacaccaataacaacttgatgtgtggagcaa 3874435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 28251410 - 28251463
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||||| ||| |||| ||||||||||| ||||||||| |||||||||    
T  28251410 tgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgtgtggagcaa 28251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 17824 - 17706
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17824 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 17725  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  17724 aaaaacagcaagagataaa 17706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 25405745 - 25405627
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25405745 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 25405646  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  25405645 aaaaacagcaagagataaa 25405627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 7070126 - 7070008
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7070126 tgttgtgaattcgtagagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 7070027  T
Q  610 -aaaacagcaagagataaa 627  Q
     ||||||||||||||||||    
T  7070026 aaaaacagcaagagataaa 7070008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 507 - 627
Target Start/End: Original strand, 3319866 - 3319988
Alignment:
Q  507 ttgtgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcc 604  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3319866 ttgtgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaattaatcc 3319965  T
Q  605 aaacaaaaacagcaagagataaa 627  Q
    |||||||||||||||||||||||    
T  3319966 aaacaaaaacagcaagagataaa 3319988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 509 - 627
Target Start/End: Original strand, 8378356 - 8378473
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8378356 gtgttgtgaattcgttgagaaaaccagaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaattaagcgggtagcaaataatccaaac 8378455  T
Q  609 aaaaacagcaagagataaa 627  Q
     ||||||||||||||||||    
T  8378456 -aaaacagcaagagataaa 8378473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 509 - 627
Target Start/End: Complemental strand, 7075128 - 7075009
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7075128 gtgttgtgaattcgtagagaaaatcacaccaataaaacttgatgcgtggagaaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 7075029  T
Q  609 a-aaaacagcaagagataaa 627  Q
    | ||||||||||||||||||    
T  7075028 aaaaaacagcaagagataaa 7075009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 25351683 - 25351561
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25351683 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 25351584  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  25351583 aaaagtaaacagcaagagataaa 25351561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 3324637 - 3324756
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  3324637 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaattaatgcaaa 3324736  T
Q  608 caaaaacagcaagagataaa 627  Q
    |||||||| |||||||||||    
T  3324737 caaaaacaacaagagataaa 3324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 15540844 - 15540963
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  15540844 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaaacaagcggatagcaaataatccaaa 15540943  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||| ||||||    
T  15540944 caaaaacagcaagcgataaa 15540963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 509 - 613
Target Start/End: Complemental strand, 30247304 - 30247198
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30247304 gtgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgcggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 30247205  T
Q  607 acaaaaa 613  Q
    |||||||    
T  30247204 acaaaaa 30247198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 509 - 627
Target Start/End: Original strand, 44143721 - 44143843
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44143721 gtgttgcgaattcgttgtgaaaaccacaccaataaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaac 44143820  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  44143821 aaaagtaaacagcaagagataaa 44143843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 2075436 - 2075320
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2075436 tgttgtgaattcgttgagaaa--cacaccaataaaaaacttgatgcgtggagcaaattaataccaagtaatcaaaacaagcgggtagcaaataatccaaa 2075339  T
Q  608 caaaaacagcaagagataa 626  Q
    |||||| ||||||||||||    
T  2075338 caaaaatagcaagagataa 2075320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 613
Target Start/End: Original strand, 7464365 - 7464469
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  7464365 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaattaatccaaaa 7464464  T
Q  609 aaaaa 613  Q
    |||||    
T  7464465 aaaaa 7464469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 512 - 613
Target Start/End: Original strand, 34546734 - 34546835
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaa 611  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  34546734 ttgtgaatttgttgagaaaaccacaccaataaaacttgatgcgtggaacaaattaatatcaagtaatcaaattaagcgggtagcaaataatccaaacaaa 34546833  T
Q  612 aa 613  Q
    ||    
T  34546834 aa 34546835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 44016514 - 44016618
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||  |||    
T  44016514 tgttgtgaattcgttgtgaaaaccacaccaataataaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagtggatagcaaataattaaaa 44016613  T
Q  608 caaaa 612  Q
    |||||    
T  44016614 caaaa 44016618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 25357378 - 25357274
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||| |||||||||||||||||||||||||||  ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  25357378 tgttgtcaattcgttgagaaaaccacaccaataacaaacttgatgtgtggagcaaaataatatcaagtaatcaaatcaagcgggtagcaaataatcaaaa 25357279  T
Q  608 caaaa 612  Q
     ||||    
T  25357278 gaaaa 25357274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 509 - 612
Target Start/End: Complemental strand, 2121230 - 2121128
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaata-aaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| || |||||| |||||||||    
T  2121230 gtgttgtgaattcgttgagaaa--cacaccaatataaacttgatgtgtggagcaaattaataccaagcaatcaaatcaagtggatagcaattaatccaaa 2121133  T
Q  608 caaaa 612  Q
    |||||    
T  2121132 caaaa 2121128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 512 - 612
Target Start/End: Complemental strand, 25410463 - 25410361
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||| |||||||||| ||||| |||||  ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  25410463 ttgtgaatttgttgagaaaatcacactaataacaaacttgatgtgttgagcaaaataatatcaagtaatcaaatcaagcgggtagcaaataatccaaaca 25410364  T
Q  610 aaa 612  Q
    |||    
T  25410363 aaa 25410361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 44010603 - 44010726
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||  |||||| ||||||||||  || ||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  44010603 tgttgtgaattcgttctgaaaactacaccaataataaatttgatgcatggagcaaattaatatcaagtaatcaaatcaagcggatagcaaataattcaaa 44010702  T
Q  608 caa----aaacagcaagagataaa 627  Q
    |||    |||||||||||||||||    
T  44010703 caaaagtaaacagcaagagataaa 44010726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 42006992 - 42006888
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||| | |||||||| || |||||  ||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||| ||||    
T  42006992 tgttgtgaattcgtagtgaaaaccatacaaataataaacttgatgcgtgaagcaaattaatacaaagtaatcaaatcaagcgagtatcaaataattcaaa 42006893  T
Q  608 caaaa 612  Q
    |||||    
T  42006892 caaaa 42006888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 592
Target Start/End: Complemental strand, 21369970 - 21369888
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggt 592  Q
    ||||||||||| || ||||| ||||| |||||  || |||||||||||||||||||||||| |||||||||||||||||||||    
T  21369970 ttgtgaattcggtgtgaaaagcacactaataataaatttgatgcgtggagcaaattaatactaagtaatcaaatcaagcgggt 21369888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 510 - 568
Target Start/End: Original strand, 44512363 - 44512423
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaat--aaaacttgatgcgtggagcaaattaat 568  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  44512363 tgttgtgaattcgttgagaaaaacacaccaataaaaaacttgatgcgtggagcaaattaat 44512423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 24749035 - 24748981
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||||||| |||||||||||||||||||  |||||||||| |||||||||    
T  24749035 tgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 24748981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 444044 - 443989
Alignment:
Q  510 tgttgtgaattcgttgagaaaac-cacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||||||| ||||||||| ||||||||||  |||||||||| |||||||||    
T  444044 tgttgtgaattcgatgagaaaactcacaccaataacaaacttgatgtgtggagcaa 443989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 15831478 - 15831360
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15831478 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 15831379  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  15831378 aaaaacagcaagagataaa 15831360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 11853897 - 11853778
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11853897 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgggtggagcaaattaataccaagcaatcaaatcaagcgggtagcaaataatccaaa 11853798  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||||||||    
T  11853797 caaaaacagcaagagataaa 11853778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 15312649 - 15312526
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15312649 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 15312550  T
Q  608 caa----aaacagcaagagataaa 627  Q
    |||    |||||||||||||||||    
T  15312549 caaaagtaaacagcaagagataaa 15312526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 18587298 - 18587176
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18587298 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaac 18587199  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  18587198 aaaaataaacagcaagagataaa 18587176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 16688794 - 16688916
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  16688794 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaatatcaagtaatcgaatcaagcgggtagcaaataatccaaac 16688893  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  16688894 aaaagtaaacagcaagagataaa 16688916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 4555915 - 4556036
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  4555915 tgttgtgaatttgttgagaaaaccacaccaataaaatttgatgcgtggagcaaattaataccaaataatcaaatcaagcgggtagcaattaatccaaaca 4556014  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  4556015 aaagtaaacagcaagagataaa 4556036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 610
Target Start/End: Complemental strand, 4570420 - 4570320
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4570420 tgttgtgaattcgttttgaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaaca 4570321  T
Q  610 a 610  Q
    |    
T  4570320 a 4570320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 7050125 - 7050246
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  7050125 tgttgtgaattcgttgtgaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagttatcaaatcaagcgggtagcatataattcaaaca 7050224  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  7050225 aaattaaacagcaagagataaa 7050246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 510 - 607
Target Start/End: Complemental strand, 8529600 - 8529502
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8529600 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaatagtccaaa 8529502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 4558639 - 4558516
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||    
T  4558639 tgttgtgaattcgttgagaaaaccacaccaataataaacttgatgcgtggagcaaattattaccaagtaatcaaatcaagcgggtatcaaataattcaaa 4558540  T
Q  608 caaa----aacagcaagagataaa 627  Q
    ||||    ||||||||||||||||    
T  4558539 caaaaattaacagcaagagataaa 4558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 15317290 - 15317167
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  15317290 tgttgtgaattcgttgagaaaaccacaccaataaaaaacttgatgcatggagcaaatgaataccaagtaatccaatcaagcgggtagcaaataatccaaa 15317191  T
Q  608 caa----aaacagcaagagataaa 627  Q
    |||    |||||||||||||||||    
T  15317190 caaaagtaaacagcaagagataaa 15317167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 510 - 607
Target Start/End: Complemental strand, 16489681 - 16489583
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16489681 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaatatcaagtaatcaaatcaagcgggtagcaaataatccaaa 16489583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 55822591 - 55822472
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  55822591 tgttgtgaattcgttgagaaaactataccaataaaaacttgatgtgtggagcaaattaatatcaagtaatcaaatcaggcgggtagcaattaatccaaac 55822492  T
Q  609 a-aaaacagcaagagataaa 627  Q
    | ||||||||||||||||||    
T  55822491 aaaaaacagcaagagataaa 55822472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 510 - 611
Target Start/End: Complemental strand, 4885202 - 4885100
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4885202 tgttgtgaattcgttgtaaaaatcacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtaacaaataatccaaac 4885103  T
Q  609 aaa 611  Q
    |||    
T  4885102 aaa 4885100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 47566821 - 47566717
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||    
T  47566821 tgttgtgaattctttgagaaaaccacaccaataataaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcggatatcaaataattcaaa 47566722  T
Q  608 caaaa 612  Q
    |||||    
T  47566721 caaaa 47566717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 509 - 612
Target Start/End: Complemental strand, 36771726 - 36771621
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    |||||||||||| |||| |||||||||| ||||||  |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  36771726 gtgttgtgaatttgttgtgaaaaccacaacaataataaacttgatgcgttgagcaaattaataccaaataatcaaatcaagcgggtagcaaataattcaa 36771627  T
Q  607 acaaaa 612  Q
    ||||||    
T  36771626 acaaaa 36771621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 515 - 612
Target Start/End: Complemental strand, 36769803 - 36769704
Alignment:
Q  515 tgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaa 612  Q
    ||||||||||| |||||||||||||||||  ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||    
T  36769803 tgaattcgttgtgaaaaccacaccaataataaacttgatgcgtgaagcaaattaatatcaagtaatcaaatcaagtgggtagcaaataattcaaacaaaa 36769704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 564
Target Start/End: Complemental strand, 31300732 - 31300677
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaat-aaaacttgatgcgtggagcaaat 564  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  31300732 tgttatgaattcgttgagaaaaccacaccaataaaaacttgatgcgtgaagcaaat 31300677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 4874336 - 4874410
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatca 585  Q
    ||||||||||||||||  |||| |||||||| ||||||||||  |||||||| ||||| |||||| ||||||||||    
T  4874336 tgttgtgaattcgttgcaaaaatcacaccaacaaaacttgatatgtggagcatattaa-accaagcaatcaaatca 4874410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 18682788 - 18682666
Alignment:
Q  130 tcatgtacatatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatggttcctcacaaatcacaatctatgttcaatga 229  Q
    |||||||  |||||||||||||| |||| ||||||||| || |||||||| | | |||  || ||||||||| ||||||       ||| ||| ||||||    
T  18682788 tcatgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaa-------tctctgtacaatga 18682696  T
Q  230 tgtgaacttccatttcaaaaagttggatgc 259  Q
    ||||||| | ||||||||||||||||||||    
T  18682695 tgtgaaccttcatttcaaaaagttggatgc 18682666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 579 - 627
Target Start/End: Complemental strand, 31300681 - 31300629
Alignment:
Q  579 caaatcaagcgggtagcaaataatccaaacaa----aaacagcaagagataaa 627  Q
    ||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  31300681 caaatcaagcgggtagcaaataatccaaacaaaagtaaacagcaagagataaa 31300629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 32273806 - 32273860
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaat 564  Q
    ||||||||||||||||  |||| ||||||||||||||||||||  ||||||||||    
T  32273806 tgttgtgaattcgttgcaaaaatcacaccaataaaacttgatgtctggagcaaat 32273860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 613
Target Start/End: Original strand, 25613809 - 25613915
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggt-agcaaataatcca 605  Q
    ||||| |||||||||||  ||||| ||||||||||||  ||||||| || ||||||||||| |||||  ||||||||||||| ||| |  ||||||| ||    
T  25613809 gtgttatgaattcgttgcaaaaac-acaccaataaaaaacttgatgtgttgagcaaattaaaaccaaacaatcaaatcaagcaggtgaaaaaataattca 25613907  T
Q  606 aacaaaaa 613  Q
    ||||||||    
T  25613908 aacaaaaa 25613915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 47563249 - 47563194
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    |||||||||||| | |||||||||||||||||||  |||||||||| |||||||||    
T  47563249 gtgttgtgaatttgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 47563194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 568
Target Start/End: Original strand, 16185686 - 16185746
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaa--acttgatgcgtggagcaaattaat 568  Q
    ||||||||||||||||| || | ||||||||||||  ||||||||  ||||||||||||||    
T  16185686 tgttgtgaattcgttgaaaagatcacaccaataaaatacttgatgtatggagcaaattaat 16185746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 590
Target Start/End: Complemental strand, 16639154 - 16639075
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgg 590  Q
    |||||||||||| |||  ||||| | |||||||||| ||||||| |||||||||| ||| |||||| |||||||||||||||    
T  16639154 tgttgtgaattctttgcaaaaac-ataccaataaaaacttgatgtgtggagcaaa-taaaaccaagcaatcaaatcaagcgg 16639075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 18709003 - 18709056
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||| | ||| |||||||||||||||| ||||||||| |||||||||    
T  18709003 tgttgtgaatttgatgaaaaaaccacaccaataacaacttgatgtgtggagcaa 18709056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 40637566 - 40637513
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||| |||||||||||||| | ||||||||||| ||||||||| |||||||||    
T  40637566 tgttgcgaattcgttgagaatatcacaccaataacaacttgatgtgtggagcaa 40637513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 597
Target Start/End: Complemental strand, 16631511 - 16631425
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaa 597  Q
    ||||||||||| ||||  ||||| | |||||||||| |||||| | |||||||||| || |||||| ||||||||||||||||| ||||    
T  16631511 tgttgtgaatttgttgcaaaaacaa-accaataaaaacttgatccatggagcaaataaa-accaagaaatcaaatcaagcgggtggcaa 16631425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 6303642 - 6303524
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6303642 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 6303543  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  6303542 aaaaacagcaagagataaa 6303524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 10099924 - 10100042
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10099924 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 10100023  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  10100024 aaaaacagcaagagataaa 10100042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 10093923 - 10094041
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10093923 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 10094022  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  10094023 aaaaacagcaagagataaa 10094041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 10200805 - 10200923
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10200805 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 10200904  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  10200905 aaaaacagcaagagataaa 10200923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 54193557 - 54193439
Alignment:
Q  510 tgttgtgaattcgtt-gagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54193557 tgttgtgaattcgtttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaaccaagcgggtagcaaataatccaaac 54193458  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  54193457 aaaaacagcaagagataaa 54193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 510 - 626
Target Start/End: Complemental strand, 27544619 - 27544504
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  27544619 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgttgagcaaattaatatcaagtaatcaaatcaagcgggtagcaaataatccaaac- 27544521  T
Q  610 aaaacagcaagagataa 626  Q
    |||||||||||||||||    
T  27544520 aaaacagcaagagataa 27544504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 54188841 - 54188723
Alignment:
Q  510 tgttgtgaattcgtt-gagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  54188841 tgttgtgaattcgtttgagaaaaccacaccaataaaatttgatgcgtggagcaaattaataccaagtaatcaaaccaagcgggtagcaaataatccaaac 54188742  T
Q  609 aaaaacagcaagagataaa 627  Q
    ||||||| |||||||||||    
T  54188741 aaaaacaacaagagataaa 54188723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 22625829 - 22625947
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  22625829 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaataccaagtaatcaaaagaagcgggtagcaaataatccaaac 22625928  T
Q  609 aaaaacagcaagagataaa 627  Q
    ||||||| |||||||||||    
T  22625929 aaaaacaacaagagataaa 22625947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 10897336 - 10897214
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10897336 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggaacaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 10897237  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  10897236 aaaaataaacagcaagagataaa 10897214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 509 - 627
Target Start/End: Complemental strand, 5858875 - 5858753
Alignment:
Q  509 gtgttgtgaattcg-ttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatc---c 604  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
T  5858875 gtgttgtgaattcgattgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaac 5858776  T
Q  605 aaacaaaaacagcaagagataaa 627  Q
    |||  ||||||||||||||||||    
T  5858775 aaaataaaacagcaagagataaa 5858753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 11079845 - 11079724
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  11079845 tgttgtgaattcgttgtgaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagtgggtagcaaataattcaaaca 11079746  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  11079745 aaagtaaacagcaagagataaa 11079724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 10594883 - 10595006
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa- 607  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||     
T  10594883 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatacgtggagtaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaa 10594982  T
Q  608 caaaa----acagcaagagataaa 627  Q
    |||||    |||||||||||||||    
T  10594983 caaaagtaaacagcaagagataaa 10595006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 509 - 614
Target Start/End: Original strand, 10949114 - 10949219
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||    
T  10949114 gtgttgtgaattcgctgtgaaaaccacatcaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagctcgtagcaaataattcaaac 10949213  T
Q  609 aaaaac 614  Q
    ||||||    
T  10949214 aaaaac 10949219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 29897527 - 29897631
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  29897527 tgttgtgaattcgttgagaaaaccacaccaataacaaacttgatgtgtggagcagattaataccaaataatcaaatcaagcgggtagcaaataatccaaa 29897626  T
Q  608 caaaa 612  Q
    |||||    
T  29897627 caaaa 29897631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 47882738 - 47882859
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||    
T  47882738 tgttgtgaattcattgtgaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaattaatcaaatcaagtgggtagtaaataattcaaaca 47882837  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  47882838 aaagtaaacagcaagagataaa 47882859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 510 - 614
Target Start/End: Original strand, 20031170 - 20031276
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||| |||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20031170 tgttgtgaattcgttgtgaaaaccacaccaataaaaaacatgatgcgtagagcaaattaataccaagtaatcaaatcaagcgggtagcgaataatccaaa 20031269  T
Q  608 caaaaac 614  Q
    |||||||    
T  20031270 caaaaac 20031276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 516 - 627
Target Start/End: Original strand, 47878033 - 47878147
Alignment:
Q  516 gaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa----a 611  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    |    
T  47878033 gaattcgttgtgaaaaccacaccaataaaacttgatgcgtggagcaaattaata-caagtaatcaaatcaagtgggtagcaaataattcaaacaaaagta 47878131  T
Q  612 aacagcaagagataaa 627  Q
    ||||||||||||||||    
T  47878132 aacagcaagagataaa 47878147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 29913805 - 29913908
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    ||||||||||| ||||||||||||||||||||||  ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29913805 tgttgtgaatt-gttgagaaaaccacaccaataacaaacttgatgtgtggagcagattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 29913903  T
Q  608 caaaa 612  Q
    |||||    
T  29913904 caaaa 29913908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 509 - 627
Target Start/End: Complemental strand, 3330222 - 3330098
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  |||    
T  3330222 gtgttgtgaattcgttgtgaaaaccacaccaataacaaacttgatgcgcggagcaaattaataccaagtaatcaaatcaagcggatagcaaataactcaa 3330123  T
Q  607 acaa----aaacagcaagagataaa 627  Q
    ||||    |||||||||||||||||    
T  3330122 acaaaagtaaacagcaagagataaa 3330098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 510 - 607
Target Start/End: Original strand, 10612627 - 10612725
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  10612627 tgttatgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccagataatcaaatcaagcgagtagcaaataatccaaa 10612725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 509 - 613
Target Start/End: Complemental strand, 4535947 - 4535842
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttga-tgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||  ||||||| |||||||||| || | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4535947 gtgttgtgaattcgttgtaaaaaccagaccaataaaaatttaatgcgtggagcaaattaataccaagtaatcaaatcaagtgggtagcaaataatccaaa 4535848  T
Q  608 caaaaa 613  Q
    ||||||    
T  4535847 caaaaa 4535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 510 - 615
Target Start/End: Original strand, 48390152 - 48390260
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa---cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    |||||||||||||||||||||  |||||||||||||   |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||    
T  48390152 tgttgtgaattcgttgagaaagtcacaccaataaaaaaacttgatgcgtggagcaaattaatatcaagtaatcaaatcaaacgggtaacaaataattcaa 48390251  T
Q  607 acaaaaaca 615  Q
    |||||||||    
T  48390252 acaaaaaca 48390260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 27761840 - 27761962
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||| ||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  27761840 tgttgtaaattcgttgtgaaaaacacaccaataaaaacttgatgcatggagcaaattaatatcaactaatcaaatcaagcgggtagcaaataattcaaac 27761939  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  27761940 aaaagtaaacagcaagagataaa 27761962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 542 - 627
Target Start/End: Complemental strand, 16462495 - 16462406
Alignment:
Q  542 aaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa----aaacagcaagagataaa 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    |||||||||||||||||    
T  16462495 aaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtatcaattaatccaaacaaaaataaacagcaagagataaa 16462406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 510 - 602
Target Start/End: Complemental strand, 38003195 - 38003103
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataat 602  Q
    |||||||||||  |||  |||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38003195 tgttgtgaattgattgtaaaaaccacaccaataaaatttgacgcgtggagcaaattaataccaagtaatcaaataaagtgggtagcaaataat 38003103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 592
Target Start/End: Complemental strand, 7418378 - 7418306
Alignment:
Q  522 gttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggt 592  Q
    |||| |||||||||||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  7418378 gttgtgaaaaccacaccaataataaacttgatgcgtggaacaaattaatacaaagtaatcaaatcaagcgggt 7418306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 511 - 612
Target Start/End: Complemental strand, 13893789 - 13893686
Alignment:
Q  511 gttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaa-ataatccaaac 608  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||||| || |||||||| || ||  |||||||||||||||||  ||| ||||| |||||    
T  13893789 gttgtgaattcgttgtgaaaaacacaccaataaaaccttgatgcgttgaacaaattaaaactaaacaatcaaatcaagcgggtgacaatataattcaaac 13893690  T
Q  609 aaaa 612  Q
    ||||    
T  13893689 aaaa 13893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 568
Target Start/End: Complemental strand, 27421055 - 27420998
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaat 568  Q
    |||||||||||| |||| |||| |||||||||||||||||||| || ||||||||||||    
T  27421055 tgttgtgaattcattga-aaaatcacaccaataaaacttgatgtgttgagcaaattaat 27420998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 568
Target Start/End: Complemental strand, 16997210 - 16997150
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaaattaat 568  Q
    ||||||| |||||| |||||||| |||||||||||| |||||||  |||||||||||||||    
T  16997210 gtgttgtaaattcggtgagaaaatcacaccaataaatacttgatatgtggagcaaattaat 16997150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 36871149 - 36871202
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaa-acttgatgcgtggagcaa 562  Q
    ||||||||||||||||| |||| |||||| ||||| |||||||| |||||||||    
T  36871149 tgttgtgaattcgttgaaaaaatcacaccgataaatacttgatgtgtggagcaa 36871202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 562
Target Start/End: Original strand, 53468302 - 53468349
Alignment:
Q  517 aattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    |||||| |||||||||||||||||||  |||||||||| |||||||||    
T  53468302 aattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 53468349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 9522056 - 9521938
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9522056 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 9521957  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||||||||||||||||||    
T  9521956 aaaaacagcaagagataaa 9521938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 2232926 - 2232807
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2232926 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgtgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 2232827  T
Q  608 caaaaacagcaagagataaa 627  Q
    |||||||| |||||||||||    
T  2232826 caaaaacaacaagagataaa 2232807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 9526796 - 9526679
Alignment:
Q  510 tgttgtgaattcgttgagaaaac-cacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9526796 tgttgtgaattcgttgagaaaaatcacaccaataaaacttgatgtgtggagcaaattaataacaagtaatcaaatcaagcgggtagcaaataatccaaac 9526697  T
Q  609 aaaaacagcaagagataaa 627  Q
     ||||||||||||||||||    
T  9526696 -aaaacagcaagagataaa 9526679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 2393133 - 2393253
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  2393133 tgttgtgaattcgttgtgaaaaccacaccaataaaactttatgcgtggagcaaattaataccaagtaatcaaatcaagtggatagcaattaatccaaaca 2393232  T
Q  610 a---aaacagcaagagataaa 627  Q
    |   |||||||||||||||||    
T  2393233 aagtaaacagcaagagataaa 2393253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 21353197 - 21353301
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||    
T  21353197 tgttatgaattcgttgagaaaaccacaccaataacaaacttgatgcgtggagcaaattaatactaagtaattaaatcaagtgggtagcaaataatccaaa 21353296  T
Q  608 caaaa 612  Q
    |||||    
T  21353297 caaaa 21353301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 2401074 - 2401194
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || || ||| |||||||||||    
T  2401074 tgttgtgaattcgttgtgaaaatcacacaaataaaacttgatgcgtagagcaaattaataccaagtaatcaaatcaagtggataacaattaatccaaaca 2401173  T
Q  610 a---aaacagcaagagataaa 627  Q
    |   ||||| |||||||||||    
T  2401174 aagtaaacaacaagagataaa 2401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 516 - 627
Target Start/End: Original strand, 4144543 - 4144660
Alignment:
Q  516 gaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa--- 610  Q
    |||||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||       
T  4144543 gaattcgttgtgaaaaccacaccaataataatcttgatacgtggagcaaattaataccaagtaatcaaatcaagcggatagcaaataattcaaacaaaag 4144642  T
Q  611 -aaacagcaagagataaa 627  Q
     |||||||||||||||||    
T  4144643 taaacagcaagagataaa 4144660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 510 - 615
Target Start/End: Complemental strand, 25134399 - 25134293
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaactt-gatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||| || ||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  25134399 tgttgtgaattcgttgtgaaaaccacaccaataaaaatttgatgcgtgaagtaaattaatatcaaataatcaaatcaagcgggtagtaaataattcaaac 25134300  T
Q  609 aaaaaca 615  Q
    |||||||    
T  25134299 aaaaaca 25134293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 25860252 - 25860306
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    |||||||||||||||| ||||||||||||||||  |||||||||| |||||||||    
T  25860252 tgttgtgaattcgttgtgaaaaccacaccaatatcaaacttgatgtgtggagcaa 25860306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 13215519 - 13215465
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||| |||||||||    
T  13215519 gtgttgtgaattcgttgagaaaa-cacaccaataataaacttgatgtgtggagcaa 13215465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 587
Target Start/End: Original strand, 9314522 - 9314574
Alignment:
Q  533 cacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaag 587  Q
    |||||||||||||||||||| |||||||||||  | || ||||||||||||||||    
T  9314522 cacaccaataaaacttgatgtgtggagcaaat--aaacaaagtaatcaaatcaag 9314574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 590
Target Start/End: Original strand, 3090960 - 3091039
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttg-atgcgtggagcaaattaataccaagtaatcaaatcaagcgg 590  Q
    ||||||||||||||||  ||||| |||||||||||| ||  ||| ||||||||||| || |||||| |||||||||||||||    
T  3090960 tgttgtgaattcgttgcaaaaac-acaccaataaaaatttcatgtgtggagcaaataaa-accaagaaatcaaatcaagcgg 3091039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 559
Target Start/End: Complemental strand, 13762277 - 13762225
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggag 559  Q
    ||||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||    
T  13762277 tgtgttgcgaattcgatgagaaaatcacaccaataacaacttgatgtgtggag 13762225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 2919 - 3037
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2919 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 3018  T
Q  609 aaaaacagcaagagataaa 627  Q
    ||||||||||||| |||||    
T  3019 aaaaacagcaagaaataaa 3037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 2736536 - 2736417
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2736536 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtagagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 2736437  T
Q  610 --aaaacagcaagagataaa 627  Q
      ||||||||||||||||||    
T  2736436 aaaaaacagcaagagataaa 2736417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 613
Target Start/End: Original strand, 27517491 - 27517594
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27517491 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 27517590  T
Q  610 aaaa 613  Q
    ||||    
T  27517591 aaaa 27517594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 45680054 - 45679935
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45680054 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 45679955  T
Q  608 caaaaacagcaagagataaa 627  Q
    ||||||||||||||||||||    
T  45679954 caaaaacagcaagagataaa 45679935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 509 - 627
Target Start/End: Original strand, 22712373 - 22712495
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  22712373 gtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtatcaattaatccaaac 22712472  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  22712473 aaaaataaacagcaagagataaa 22712495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 22717083 - 22717204
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22717083 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcatggagcaaattaataccaagtaatcaaatcaagcgggtagcaattaatccaaaca 22717182  T
Q  610 a----aaacagcaagagataaa 627  Q
    |    |||||||||||||||||    
T  22717183 aaaataaacagcaagagataaa 22717204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 33670817 - 33670936
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33670817 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggatcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 33670916  T
Q  609 -aaaaacagcaagagataaa 627  Q
     |||||||||||||| ||||    
T  33670917 aaaaaacagcaagaggtaaa 33670936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 522 - 627
Target Start/End: Complemental strand, 2741260 - 2741153
Alignment:
Q  522 gttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca--aaaacagcaa 619  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2741260 gttgagaaaaccacaccaataaaacttgatgcgtagagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaaaacagcaa 2741161  T
Q  620 gagataaa 627  Q
    ||||||||    
T  2741160 gagataaa 2741153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 39680377 - 39680257
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39680377 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 39680278  T
Q  608 ca-aaaacagcaagagataaa 627  Q
    || ||||||||||||| ||||    
T  39680277 caaaaaacagcaagagttaaa 39680257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 39687321 - 39687201
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39687321 tgttgtgaattcgttgagaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 39687222  T
Q  608 ca-aaaacagcaagagataaa 627  Q
    || ||||||||||||| ||||    
T  39687221 caaaaaacagcaagagttaaa 39687201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 512 - 613
Target Start/End: Original strand, 12781075 - 12781177
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa 610  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12781075 ttgtgaattcgttgagaaaaccataccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa 12781174  T
Q  611 aaa 613  Q
    |||    
T  12781175 aaa 12781177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 510 - 625
Target Start/End: Complemental strand, 17943867 - 17943747
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17943867 tgttgtgaattcgttgagaaaaacacaccaataacaaacttgatgcgtggagcaaattaataccaagtaatcaaattaagcgggtagcaaataatccaaa 17943768  T
Q  608 ca---aaaacagcaagagata 625  Q
    ||   ||||||||||||||||    
T  17943767 caaataaaacagcaagagata 17943747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 510 - 613
Target Start/End: Complemental strand, 38191345 - 38191242
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38191345 tgttgtgaattcgttgtgaaaatcacaccaataaaacttaatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattcaaaca 38191246  T
Q  610 aaaa 613  Q
    ||||    
T  38191245 aaaa 38191242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 17462767 - 17462650
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  17462767 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaataccgagtaatcaaatcaagcgggtagcaattaatccacac 17462668  T
Q  609 aaaaacagcaagagataaa 627  Q
     |||||||||||| |||||    
T  17462667 -aaaacagcaagaaataaa 17462650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 20054610 - 20054735
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa---cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20054610 tgttgtgaattcgttgagaaaaccacaccaataaaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcggatagcaaataatccaa 20054709  T
Q  607 a-caaaa----acagcaagagataaa 627  Q
    | |||||    |||||||||||||||    
T  20054710 aacaaaagtaaacagcaagagataaa 20054735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 20049866 - 20049991
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa---cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  20049866 tgttgtgaattcgttgagaaaaccacaccaataaaaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaatcggatagcaaataatccaa 20049965  T
Q  607 a-caaaa----acagcaagagataaa 627  Q
    | |||||    |||||||||||||||    
T  20049966 aacaaaagtaaacagcaagagataaa 20049991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 37170607 - 37170729
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||    
T  37170607 tgttgtgaattcgttgtgaaaatcacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagtgggtagtaaataattcaaac 37170706  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  37170707 aaaagtaaacagcaagagataaa 37170729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 512 - 627
Target Start/End: Complemental strand, 30479322 - 30479203
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa- 610  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||| || || ||||||||||||| ||||||||||||||||||||||     
T  30479322 ttgtgaatttgttgagaaaaccacatcaataatacttgatgcgtggagtaaattaacacaaaataatcaaatcaagtgggtagcaaataatccaaacaaa 30479223  T
Q  611 ---aaacagcaagagataaa 627  Q
       |||||||||||||||||    
T  30479222 aataaacagcaagagataaa 30479203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 564
Target Start/End: Original strand, 28458693 - 28458751
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaat----aaaacttgatgcgtggagcaaat 564  Q
    |||||||||||| ||| |||||||||||||||    |||||||||||||| ||||||||    
T  28458693 tgttgtgaattcattgtgaaaaccacaccaataaaaaaaacttgatgcgtagagcaaat 28458751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 510 - 563
Target Start/End: Original strand, 7462789 - 7462844
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaaa 563  Q
    ||||| ||||||||||||||||||||| | |||  |||||||||| ||||||||||    
T  7462789 tgttgcgaattcgttgagaaaaccacatcgataacaaacttgatgtgtggagcaaa 7462844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 2297849 - 2297965
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaaca 609  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  2297849 tgttgtgaattcgttgagaaaaccacaccaacaaaacttgatgcgtggagtaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac- 2297947  T
Q  610 aaaacagcaagagataaa 627  Q
    ||||||||||||||||||    
T  2297948 aaaacagcaagagataaa 2297965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 505 - 627
Target Start/End: Complemental strand, 22673168 - 22673042
Alignment:
Q  505 acttgtgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcc 604  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22673168 acttgtgttgtgaattcgttaagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataattc 22673069  T
Q  605 aaacaa----aaacagcaagagataaa 627  Q
    ||||||    |||||||||||||||||    
T  22673068 aaacaaaaataaacagcaagagataaa 22673042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 510 - 627
Target Start/End: Original strand, 35385303 - 35385421
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35385303 tgttgtgaattcattgagaaaactacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 35385402  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||| || |||||||||||    
T  35385403 aaaatcaacaagagataaa 35385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 1171142 - 1171024
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  1171142 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgtgtggagcaaattaatatcaagtaatcaaaacaagcgggtagcaattaatccaaac 1171043  T
Q  609 aaaaacagcaagagataaa 627  Q
    |||| ||||||||||||||    
T  1171042 aaaaccagcaagagataaa 1171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 42238588 - 42238466
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42238588 tgttgtgaattcgttgtaaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 42238489  T
Q  609 aa----aaacagcaagagataaa 627  Q
    ||    |||||||||||||||||    
T  42238488 aaaaataaacagcaagagataaa 42238466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 510 - 607
Target Start/End: Complemental strand, 1240760 - 1240662
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240760 tgttgtgaattcgttgaggaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 1240662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 532 - 627
Target Start/End: Complemental strand, 25452802 - 25452705
Alignment:
Q  532 ccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacagcaagagataaa 627  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452802 ccacaccaataaaatacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacagcaagagataaa 25452705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 512 - 613
Target Start/End: Complemental strand, 28786728 - 28786626
Alignment:
Q  512 ttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaa 610  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  28786728 ttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggagcaaattaataccaaataatcaaatcaagcgggtagcaaataattcaaacaa 28786629  T
Q  611 aaa 613  Q
    |||    
T  28786628 aaa 28786626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 532 - 627
Target Start/End: Complemental strand, 25445803 - 25445706
Alignment:
Q  532 ccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacagcaagagataaa 627  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25445803 ccacaccaataaaatacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaacatcaagagataaa 25445706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 510 - 612
Target Start/End: Complemental strand, 40223097 - 40222993
Alignment:
Q  510 tgttgtgaattcgttg-agaaaaccacaccaataaaactt-gatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaa 607  Q
    |||||||||||||||| | |||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  40223097 tgttgtgaattcgttgtaaaaaaccacaccaataaaaatttgatgcgtggagtaaattaataccaagtaatcaaatcaagagggtagcaaataatccaaa 40222998  T
Q  608 caaaa 612  Q
    |||||    
T  40222997 caaaa 40222993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 508 - 612
Target Start/End: Original strand, 11962285 - 11962390
Alignment:
Q  508 tgtgttgtgaattcgttgagaaaaccacaccaataaaa--cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatcca 605  Q
    |||||||||||||||||| |||||||||||||||||||  |||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  11962285 tgtgttgtgaattcgttgtgaaaaccacaccaataaaaaacttgatgc-tgtagcaaattaatactaagtaatcaaatcaagcgggtagcaaataattca 11962383  T
Q  606 aacaaaa 612  Q
    |||||||    
T  11962384 aacaaaa 11962390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 516 - 613
Target Start/End: Original strand, 17841110 - 17841207
Alignment:
Q  516 gaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaacaaaaa 613  Q
    |||||||||| |||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||    
T  17841110 gaattcgttgtgaaaactacaccaataaaacttgatgcgtggggcaaattaatatcgagtaatcaaattaagcgggtagcaaataattcaaacaaaaa 17841207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 509 - 612
Target Start/End: Complemental strand, 20437250 - 20437145
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    ||||||||||||||||| ||||| |||||||| ||  ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  20437250 gtgttgtgaattcgttgtgaaaatcacaccaacaataaacttgatgtgttgagcaaattaatatcaagtaatcaaatcaagcgggtagcaaataattcaa 20437151  T
Q  607 acaaaa 612  Q
    ||||||    
T  20437150 acaaaa 20437145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 510 - 612
Target Start/End: Original strand, 16093144 - 16093249
Alignment:
Q  510 tgttgtgaattcgttgagaaaa-ccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaa 606  Q
    |||||||||||||||| ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||  || |||||||| |||    
T  16093144 tgttgtgaattcgttgtgaaaaaccacaccaataataaacttgatgcgtggagtaaattaataccaagtaatcaaatcaagcgaataacaaataattcaa 16093243  T
Q  607 acaaaa 612  Q
    ||||||    
T  16093244 acaaaa 16093249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 510 - 592
Target Start/End: Complemental strand, 10627695 - 10627611
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa--aacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggt 592  Q
    |||||||||||| ||| |||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10627695 tgttgtgaattcattgtgaaaaccacaccaataataaacttgatgcgtggagcaaattaaaaccaagcaatcaaatcaagcgggt 10627611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 510 - 613
Target Start/End: Original strand, 31782311 - 31782413
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaa-ataatccaaac 608  Q
    ||||||||||| ||||  |||| || ||||||||||||||||| |||||||| ||  | |||||| |||||||||||||||||  ||| ||||| |||||    
T  31782311 tgttgtgaatttgttgcaaaaatcataccaataaaacttgatgtgtggagcatat--aaaccaagaaatcaaatcaagcgggtgacaatataattcaaac 31782408  T
Q  609 aaaaa 613  Q
    |||||    
T  31782409 aaaaa 31782413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 37705626 - 37705680
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||||||| |||||||||||||||||||  |||||||||| |||||||||    
T  37705626 tgttgtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 37705680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 17818338 - 17818388
Alignment:
Q  514 gtgaattcgttgagaaaaccacaccaata--aaacttgatgcgtggagcaa 562  Q
    ||||||||| |||||||||||||||||||  |||||||||| |||||||||    
T  17818338 gtgaattcgatgagaaaaccacaccaataacaaacttgatgtgtggagcaa 17818388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 10528937 - 10528990
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||| ||| |||||    
T  10528937 tgttgtgaattcgatgagaaaatcacaccaataacaacttgatgtgtgaagcaa 10528990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 592
Target Start/End: Original strand, 26406340 - 26406402
Alignment:
Q  528 aaaaccacaccaataaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggt 592  Q
    |||| ||||||||||||| |||||| |||||||||||  | |||||| |||||||||||| ||||    
T  26406340 aaaatcacaccaataaaatttgatgtgtggagcaaat--aaaccaagcaatcaaatcaagtgggt 26406402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 34033438 - 34033479
Alignment:
Q  528 aaaaccacaccaataaaacttgatgcgtggagcaaattaata 569  Q
    |||| |||||||||||||| ||||| ||||||||||||||||    
T  34033438 aaaatcacaccaataaaacgtgatgtgtggagcaaattaata 34033479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 556
Target Start/End: Complemental strand, 15552686 - 15552638
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtg 556  Q
    |||||||||||||| ||| |||| ||||||||||| |||||||||||||    
T  15552686 gtgttgtgaattcgatgaaaaaatcacaccaataacaacttgatgcgtg 15552638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 510 - 627
Target Start/End: Complemental strand, 16656 - 16540
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 608  Q
    ||||||||||||| |||  ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16656 tgttgtgaattcgatga--aaatcacaccaataaaaacttgatgcgtggagcaaattaataccaagtaatcaaatcaagcgggtagcaaataatccaaac 16559  T
Q  609 aaaaacagcaagagataaa 627  Q
    ||||||||||||| |||||    
T  16558 aaaaacagcaagaaataaa 16540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 510 - 589
Target Start/End: Original strand, 16885 - 16965
Alignment:
Q  510 tgttgtgaattcgttgagaaaaccacaccaataaaa-cttgatgcgtggagcaaattaataccaagtaatcaaatcaagcg 589  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  16885 tgttgtgaattcgttgagaaaaccacaccaataaaaacttgatgcgtggaaaaaattaataccaagtaatcaaatcaagcg 16965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 18069 - 18103
Alignment:
Q  86 ttttctgagacacaacttgtgtagcagcaacaaca 120  Q
    |||||||||||| ||||||||||||||||||||||    
T  18069 ttttctgagacagaacttgtgtagcagcaacaaca 18103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 17986 - 18014
Alignment:
Q  99 aacttgtgtagcagcaacaacactgtatg 127  Q
    |||||||||||||||||||||||||||||    
T  17986 aacttgtgtagcagcaacaacactgtatg 18014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 562
Target Start/End: Complemental strand, 474 - 421
Alignment:
Q  509 gtgttgtgaattcgttgagaaaaccacaccaataa-aacttgatgcgtggagcaa 562  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||    
T  474 gtgttgtgaattcgttgag-aaatcacaccaataacaacttgatgtgtggagcaa 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 64941 - 64991
Alignment:
Q  86 ttttctgagacacaacttgtgtagcagcaacaacactgtatggctcatgta 136  Q
    |||| ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  64941 ttttttgagacagaacttgagtagcagaaacaacactgtatggctcttgta 64991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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