View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5007_low_2 (Length: 523)
Name: NF5007_low_2
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5007_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 30255701 - 30256198
Alignment:
| Q |
18 |
acctagtgcattagctcaattatatatgtggttttcatctactttaattagtttttaatcttatagctaattagatagtatatatttaagagtaaagaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30255701 |
acctagtgcattagctcaattatatatgtggttttcatctactttaattagtttttaatcttatagctaattagatagtatacatttaagagtaaagaac |
30255800 |
T |
|
| Q |
118 |
aatgaaacatatttaactcctaatcatcaaaacagaaactatgtttaggatagagtttaggttagctatgtctataatatacaagcatgcatgaatatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255801 |
aatgaaacatatttaactcctaatcatcaaaacagaaactatgtttaggatagagtttaggttagctatgtctataatatacaagcatgcatgaatatgc |
30255900 |
T |
|
| Q |
218 |
ataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcacagtgtgccaaaatattttgatggtaactctgatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255901 |
ataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcacagtgtgccaaaatattttgatggtaactctgatat |
30256000 |
T |
|
| Q |
318 |
tactgcattcatgcattagattctctccttcttataataaataccctccttcacttcttctccatgcaatcctcaactccgcaaccttctctttcctcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30256001 |
tactgcattcatgcattagattctctccttcttataataaataccctccttcacttcttctctatgcaatcctcaactccgcaaccttctctttcctcta |
30256100 |
T |
|
| Q |
418 |
tggcctcaaaagccttaaccactggtactcactcccgaaatggacgccgtttctcagtctttgatgactcggatgaggtattcagcatgcttcttctc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256101 |
tggcctcaaaagccttaaccactggtactcactcccgaaatggacgccgtttctcagtctttgatgactcggatgaggtattcagcatgcttcttctc |
30256198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 45241746 - 45241910
Alignment:
| Q |
183 |
ctatgtctataatatacaagcatgcatgaatatgcataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcac |
282 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
45241746 |
ctatgtctataatatacaaacatgcatgcatatgcataagaaaaagcaaaacaatcatgcaatacatttcaactcaaatccatgtcctctgaactctcac |
45241845 |
T |
|
| Q |
283 |
agtgtgccaaaatattttgatggtaactctgatattactgcattcatgcattagattctctcctt |
347 |
Q |
| |
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| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45241846 |
attgtgccaaaatactttgatggttactctgatattactgcattcatgcattagattctctcctt |
45241910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 42318062 - 42317898
Alignment:
| Q |
183 |
ctatgtctataatatacaagcatgcatgaatatgcataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcac |
282 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
42318062 |
ctatgtctataatatacaaacatgcatgcatatgcataagcaaaagcaaaataatcatgcaatacatttcaactcaaatccatgtcctctgaactctcac |
42317963 |
T |
|
| Q |
283 |
agtgtgccaaaatattttgatggtaactctgatattactgcattcatgcattagattctctcctt |
347 |
Q |
| |
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| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42317962 |
attgtgccaaaatactttgatggttactctgatattactgcattcatgcattaaattctctcctt |
42317898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 45241643 - 45241751
Alignment:
| Q |
49 |
ttttcatctactttaattagtttttaatcttatagctaattagatagtatatatttaagagtaaagaacaatgaaacatatttaactcctaatcatcaaa |
148 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||||||||||||||||| || ||| || |||||||||||||||| |||||| ||||||||||| |||| |
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| T |
45241643 |
ttttcatatactttaatttgtttt-aatcttatagctaattagata---tacattaaactgtaaagaacaatgaaaaatatttcactcctaatcaccaaa |
45241738 |
T |
|
| Q |
149 |
acagaaactatgt |
161 |
Q |
| |
|
||||||||||||| |
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|
| T |
45241739 |
acagaaactatgt |
45241751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 42318165 - 42318057
Alignment:
| Q |
49 |
ttttcatctactttaattagtttttaatcttatagctaattagatagtatatatttaagagtaaagaacaatgaaacatatttaactcctaatcatcaaa |
148 |
Q |
| |
|
||||||| |||||||||| ||||| |||||||||||||||||| || || ||| | |||||||||||||||| |||||| ||||||||||| |||| |
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| T |
42318165 |
ttttcatatactttaatttgtttt-aatcttatagctaattagtta---tacattaagctgtaaagaacaatgaaaaatatttcactcctaatcaccaaa |
42318070 |
T |
|
| Q |
149 |
acagaaactatgt |
161 |
Q |
| |
|
||||||||||||| |
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|
| T |
42318069 |
acagaaactatgt |
42318057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 31663054 - 31663218
Alignment:
| Q |
183 |
ctatgtctataatatacaagcatgcatgaatatgcataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcac |
282 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
31663054 |
ctatgtctataatatacaaacatgcatgcatatgcataagcaaaagcaaaataatcatgcaatacatttcaactcaaatccatgtcctctgaactctcac |
31663153 |
T |
|
| Q |
283 |
agtgtgccaaaatattttgatggtaactctgatattactgcattcatgcattagattctctcctt |
347 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
31663154 |
attgtgccaaaatactttgatggttactctgatattactgcattcatgcattaaattctctcctt |
31663218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 31662959 - 31663059
Alignment:
| Q |
57 |
tactttaattagtttttaatcttatagctaattagatagtatatatttaagagtaaagaacaatgaaacatatttaactcctaatcatcaaaacagaaac |
156 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| || || ||| | |||||||||||||||| |||||| ||||||||||| |||||||||||| |
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|
| T |
31662959 |
tactttaatttgtttt-aatcttatagctaattagtta---tacattaagctgtaaagaacaatgaaaaatatttcactcctaatcaccaaaacagaaac |
31663054 |
T |
|
| Q |
157 |
tatgt |
161 |
Q |
| |
|
||||| |
|
|
| T |
31663055 |
tatgt |
31663059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 6671457 - 6671293
Alignment:
| Q |
183 |
ctatgtctataatatacaagcatgcatgaatatgcataaacaaaagcaaagcaatcatgcaatacatttcaactcaaatccatgacctctcaactctcac |
282 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| | |
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|
| T |
6671457 |
ctatgtctataatatacaaacatgcatgcatatgcataagcaaaagcaaaagaatcatgcaatacatttcaactcaaatccatgtcctctgaactctctc |
6671358 |
T |
|
| Q |
283 |
agtgtgccaaaatattttgatggtaactctgatattactgcattcatgcattagattctctcctt |
347 |
Q |
| |
|
| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6671357 |
attgtgccaaaatactttgatggttactctgatattactgcattcatgcattagattctctcctt |
6671293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 6671560 - 6671452
Alignment:
| Q |
49 |
ttttcatctactttaattagtttttaatcttatagctaattagatagtatatatttaagagtaaagaacaatgaaacatatttaactcctaatcatcaaa |
148 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||||||||||||||| || ||| || |||||||||||||||| |||||| ||||||||||| |||| |
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|
| T |
6671560 |
ttttcatatactttaatttatttt-aatcttatagctaattagata---tacattaaactgtaaagaacaatgaaaaatatttcactcctaatcaccaaa |
6671465 |
T |
|
| Q |
149 |
acagaaactatgt |
161 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6671464 |
acagaaactatgt |
6671452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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