View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5007_low_3 (Length: 516)
Name: NF5007_low_3
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5007_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 516
Target Start/End: Original strand, 27065778 - 27066281
Alignment:
| Q |
13 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
112 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27065778 |
catcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacga |
27065877 |
T |
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| Q |
113 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
212 |
Q |
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| T |
27065878 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaa |
27065977 |
T |
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| Q |
213 |
ccatgttttttgccaaactaccactatcactaagagagttagttgaagcagtagttttattataactagcaaaagaaatacctttcttgtcataatcctt |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065978 |
ccatgttttttgccaaactaccactatcactgagagagttagttgaagtagtagttttattataactagcaaaagaaatacctttcttgtcataatcctt |
27066077 |
T |
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| Q |
313 |
aaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagtttcacttcctggagatttt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27066078 |
aaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttgaaagtttcacttcctggagatttt |
27066177 |
T |
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| Q |
413 |
ggataacctggattaagaccgtagttattgaaatccaccttgaccccgcgctgcgaattctcaccatacgaagtgaaagaatcatcaccagaaccagctc |
512 |
Q |
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| T |
27066178 |
ggataatctggattttgaccgtagttattgaaatccaccttgaccccgcgctgcgaattctcaccatacgaagtgaaagaatcatcaccagaaccagctc |
27066277 |
T |
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| Q |
513 |
catc |
516 |
Q |
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|||| |
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| T |
27066278 |
catc |
27066281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 25 - 325
Target Start/End: Original strand, 27079507 - 27079810
Alignment:
| Q |
25 |
catcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgac |
124 |
Q |
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| T |
27079507 |
catcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtggtaaaaacgac |
27079606 |
T |
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| Q |
125 |
cttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaaccatgttttttg |
224 |
Q |
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| T |
27079607 |
cttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacccatttttttg |
27079706 |
T |
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| Q |
225 |
ccaaactaccactatcactaagagagttagttgaagcagtag---ttttattataactagcaaaagaaatacctttcttgtcataatccttaaatgtatt |
321 |
Q |
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| T |
27079707 |
ccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaataccttttttatcgtaatccttaaacgtgtt |
27079806 |
T |
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| Q |
322 |
atta |
325 |
Q |
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|||| |
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| T |
27079807 |
atta |
27079810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 27053355 - 27053538
Alignment:
| Q |
32 |
gaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgaccttggcg |
131 |
Q |
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| T |
27053355 |
gaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtg |
27053454 |
T |
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| Q |
132 |
gtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
215 |
Q |
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| T |
27053455 |
gtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 14866157 - 14866036
Alignment:
| Q |
116 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
215 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |
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| T |
14866157 |
aaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaaccc |
14866058 |
T |
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| Q |
216 |
tgttttttgccaaactaccact |
237 |
Q |
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|||||| ||||||||||||| |
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| T |
14866057 |
atttttttaccaaactaccact |
14866036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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