View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5007_low_5 (Length: 239)
Name: NF5007_low_5
Description: NF5007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5007_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 21830292 - 21830052
Alignment:
| Q |
5 |
gttaaagggactcatgtttgttattttggatttgtgtaaataatttagaagaa---aatgtgtagcttttgggtgagaagttgtggtgtttgccttgccc |
101 |
Q |
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| T |
21830292 |
gttaaagggactcatgtttgttattttgggtttttatatataacttagaagaagaaaatgtgtagcttttgggtgagaagttgtggtgtttgccttgccc |
21830193 |
T |
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| Q |
102 |
ttttataatgttt-caggtcttgaggaagtatttattggtccttcaactttgaatttat---atcttgtgaaaagggtaacttgattctgtctgtcttta |
197 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21830192 |
ttttataatgttttcaggtcttgaggaagtatttattggtccttcaactt-gaatttattatatcttgtgaaaagggtaacttgattctgtctgtcttta |
21830094 |
T |
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| Q |
198 |
gaattattcaacatttacagtgtcacacaatctacattgtct |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830093 |
gaattattcaacatttacagtgtcacacaatctacattgtct |
21830052 |
T |
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