View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5008-Insertion-3 (Length: 708)

Name: NF5008-Insertion-3
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5008-Insertion-3
NF5008-Insertion-3
[»] chr4 (1 HSPs)
chr4 (14-708)||(31111636-31112329)


Alignment Details
Target: chr4 (Bit Score: 650; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 14 - 708
Target Start/End: Original strand, 31111636 - 31112329
Alignment:
Q  14 tctttaaactttagccattcgtcctcaacaatttccatcgccttttctctacaagaacgtgcaaagcaaaaatcaccaagcataattctttcagcactca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31111636 tctttaaactttagccattcgtcctcaacaatttccatcgccttttctctacaagaacgtgcaaagcaaaaatcaccaagcataattctttcagcactca 31111735  T
Q  114 gtagcacagttagacgtccttaatgtgatgggtgtgctcacagacattgtcaacctactccaacaatagaatgcgtgtctcgctcaagtagaagaaaatc 213  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31111736 gtagcacagttagacgtccttaatgtgatgggtgtgctcacaaacattgtcaacctactccaacaatagaatgcgtgtctcactcaagtagaagaaaatc 31111835  T
Q  214 aatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccactccaatgaatgtggtagaaaatgttgcttctga 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31111836 aatataaaatttctgctgcaaatgtgacttaaattaaggtcgttcaacgaaatcaacaaaccgccactccaatgaatgtggtagaaaatgttgcttctga 31111935  T
Q  314 gaaagatgaaaatcaggatccatggcacaaagttccttcttctcctcgttgcggaggatctcctttgcacgattcagacggaggcgtaagcagtcacact 413  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31111936 gaaagatgaaaatcaggatccatggcacaaagttcctttttctcctcgttgcggaggatctcctttgcacgattcagacggaggcgtaagcggtcacact 31112035  T
Q  414 ccttcatcccgtgagagacctaaaaaatcccctcttatcattacagtccnnnnnnnggaaacactcctaaaatatatcgaaagattcaccagagaagtat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  31112036 ccttcatcccgtgagagacctaaaaaatcccctcttatcattacagtccaaaaaaaggaaacactcctaaaatatatcgaaagattcaccagagaagtat 31112135  T
Q  514 ttgaagtttgtggagtgaacgacaagcttaaatgctttattttcaagaatggtctaaggtcatattgccatatattaagaaaaattgggcttgaaggagc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31112136 ttgaagtttgtggagtgaacgacaagcttaaatgctttattttcaagaatggtctaaggtcatattg-catatattaagaaaaattgggcttgaaggagc 31112234  T
Q  614 ccaaagatatgaatgagttgctggtcaaaactcaaccatatatcaactatgaagagaaattgattggcgaggaaatccagaagaacaaaccctcc 708  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31112235 ccaaagatatgaatgagttgctggtcaaaactcaaccatatatcaactatgaagagaaattgattggcgaggaaatccagaagaacaaaccctcc 31112329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University