View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5008-Insertion-5 (Length: 76)

Name: NF5008-Insertion-5
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5008-Insertion-5
NF5008-Insertion-5
[»] chr2 (3 HSPs)
chr2 (8-76)||(13441209-13441277)
chr2 (8-76)||(13462393-13462461)
chr2 (8-76)||(13449372-13449440)
[»] chr4 (2 HSPs)
chr4 (10-53)||(48963315-48963358)
chr4 (8-76)||(48959150-48959218)
[»] chr8 (1 HSPs)
chr8 (8-76)||(12640589-12640657)
[»] chr5 (2 HSPs)
chr5 (15-75)||(12541683-12541743)
chr5 (8-76)||(28386337-28386405)
[»] chr7 (1 HSPs)
chr7 (8-50)||(3416638-3416680)
[»] chr6 (2 HSPs)
chr6 (8-46)||(12589295-12589333)
chr6 (8-51)||(12482563-12482606)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 1e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-31
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 13441277 - 13441209
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13441277 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 13441209  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 13462461 - 13462393
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    |||||||||||||||| |||||| |||||||||||||||||||||  |||||||| |||||||||||||    
T  13462461 catcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctctct 13462393  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 13449440 - 13449372
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    ||||||||||||| ||||| ||| |||||||||||||| |||||||  ||||||| |||||||||||||    
T  13449440 catcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctct 13449372  T

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Target: chr4 (Bit Score: 44; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 48963358 - 48963315
Alignment:
Q  10 tcccgtggccaacaagtcacaatcatcaccactccctccaacgc 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48963358 tcccgtggccaacaagtcacaatcatcaccactccctccaacgc 48963315  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 48959218 - 48959150
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | || | | | |||||||||||||    
T  48959218 catcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctctct 48959150  T

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Target: chr8 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 12640589 - 12640657
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||| || | | | |||||||||||||    
T  12640589 catcccatggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctct 12640657  T

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Target: chr5 (Bit Score: 41; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 12541743 - 12541683
Alignment:
Q  15 tggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctc 75  Q
    |||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||    
T  12541743 tggccaacaagtcacaatcatcaccactccctccaatgttgaaacccttaccaaatctctc 12541683  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 28386405 - 28386337
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaacgctcaatccctaaccaaatctctct 76  Q
    |||| ||||||||||| |||||||||||||||||||||||||| || |||||||| || ||| ||||||    
T  28386405 catcacgtggccaacatgtcacaatcatcaccactccctccaatgcccaatcccttactaaaactctct 28386337  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 3416638 - 3416680
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaa 50  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  3416638 catcccatggccaacatgtcacaatcatcaccactccctccaa 3416680  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 12589295 - 12589333
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccct 46  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  12589295 catcccgtggccaacaagtcacaatcaccaccactccct 12589333  T

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Target: chr6; HSP #2
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 12482563 - 12482606
Alignment:
Q  8 catcccgtggccaacaagtcacaatcatcaccactccctccaac 51  Q
    |||| |||||||| || |||||||||||||||||||| ||||||    
T  12482563 catcacgtggccatcatgtcacaatcatcaccactccttccaac 12482606  T

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