View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_high_16 (Length: 227)
Name: NF5008_high_16
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 40720862 - 40720934
Alignment:
| Q |
142 |
gcatcaatattctttgttgctatggtcattatgatcatcaataccactacactccaaatcagtattttcttcg |
214 |
Q |
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| T |
40720862 |
gcatcaatattctttgttgctatggtcattatgatcatcaataccactacactccaaagcagtattttcttcg |
40720934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 543613 - 543685
Alignment:
| Q |
142 |
gcatcaatattctttgttgctatggtcattatgatcatcaataccactacactccaaatcagtattttcttcg |
214 |
Q |
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| T |
543613 |
gcatcaatattctttgttgctatggtcactatgatcatcaatatcactacactccaaagcagtattttcttcg |
543685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 40720743 - 40720820
Alignment:
| Q |
23 |
gacgaatttgcacgacacactgctacacacaatttgctcaatgaatagccttgaatattgatgctagtttatctatat |
100 |
Q |
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| T |
40720743 |
gacgaatttgcacgacacgctgctacacacaatttgctcaatgaatactcctgaatattgatgctaatttatctatat |
40720820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 543497 - 543566
Alignment:
| Q |
26 |
gaatttgcacgacacactgctacacacaatttgctcaatgaatagccttgaatattgatgctagtttatc |
95 |
Q |
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| T |
543497 |
gaatttgcacgacacgctactacacataatttgctcaatgaataaccttgaatattgatgttagtttatc |
543566 |
T |
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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 16085728 - 16085801
Alignment:
| Q |
23 |
gacgaatttgcacgacacactgctacacacaatttgctcaatgaatagccttgaatattgatgctagtttatct |
96 |
Q |
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| T |
16085728 |
gacgaatttgcacgacacgctgctacacataatttgctcaatgaatagccttgaatattgatgctagtttatct |
16085801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 16085849 - 16085919
Alignment:
| Q |
144 |
atcaatattctttgttgctatggtcattatgatcatcaataccactacactccaaatcagtattttcttcg |
214 |
Q |
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| T |
16085849 |
atcaatattctttgttgctatggtcactatgatcatcaataaaactaccctccaaagcagtattttcttcg |
16085919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 32722247 - 32722323
Alignment:
| Q |
24 |
acgaatttgcacgacacactgctacacacaatttgctcaatgaatagccttgaatattgatgctagtttatctatat |
100 |
Q |
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|||||||| |||||||| ||| ||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
32722247 |
acgaatttacacgacacgctgatacacacaatttgttcaatgaataaccttaaatattgatactagtttatctatat |
32722323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 32722369 - 32722436
Alignment:
| Q |
145 |
tcaatattctttgttgctatggtcattatgatcatcaataccactacactccaaatcagtattttctt |
212 |
Q |
| |
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|||||||||||| |||||||| ||| | |||||||| |||||||| |||||||| |||| ||||||| |
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| T |
32722369 |
tcaatattctttattgctatgatcactgtgatcatctataccacttcactccaatgcagtgttttctt |
32722436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 52769350 - 52769273
Alignment:
| Q |
23 |
gacgaatttgcacgacacactgctacacacaatttgctcaatgaatagccttgaatattgatgctagtttatctatat |
100 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||| |||| |||||||||| |||| |
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| T |
52769350 |
gacgaatttgcacgacacgctgctacacacaacttgctcaatgaataaccttaaatactgatactagtttatccatat |
52769273 |
T |
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