View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_high_2 (Length: 564)
Name: NF5008_high_2
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 11295783 - 11296143
Alignment:
| Q |
1 |
aagaaatcattaattcatttcactttcataacatggcatattggcatgcacatatttaaccagcagaggaaatacgtgttgaaattctgacttctgagtg |
100 |
Q |
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| T |
11295783 |
aagaaatcattaattcatttcactttcataacatggcatattggcatgcacatatttaaccagcagaggaaatacgtgttgaaattctgacttctgagtg |
11295882 |
T |
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| Q |
101 |
tttcacctacttattaaatacttgggatacacatgaatatgatatagtctgcaagtgcttggtcttcccatttgaaagccacagtttttgtgttcaattt |
200 |
Q |
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| T |
11295883 |
tttcacctacttattaaatacttgggatacacatgaatatgatatagtctgcaagtacttggtctacccatttgtaagccacagtttttgtgttcaattt |
11295982 |
T |
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| Q |
201 |
tgcaatcctattctattttgctagttaattttgcaaagccaaaattttgagaaaatgaatatataataatatcatagtgaaggaaaaatgacacaaaaat |
300 |
Q |
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| T |
11295983 |
tgcaatcctattctattttgctagttaattttgcaaagccaaaattttgagaaaatgaatatataataata-catagtgaaggaaaaatgacacaaaaat |
11296081 |
T |
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| Q |
301 |
atccaggttaatttgttgccaggaaactagagatgtatgtaaatgaagtagaaaaaggaaca |
362 |
Q |
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| T |
11296082 |
atccaggttaatttgttgccaggaaactagagatgtatgtaaatgaagtagaaaaaggaaca |
11296143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 476 - 555
Target Start/End: Original strand, 11296287 - 11296366
Alignment:
| Q |
476 |
tacaatcttcttttgatcattcattatttactaagaaattcggtaattctttcgtagccattttaatttatgttgatgat |
555 |
Q |
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| T |
11296287 |
tacaatcttcttttgatcattcattatttactaagaaatttggtaattctttcgtagccattttaatttatgttgatgat |
11296366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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