View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_high_20 (Length: 202)
Name: NF5008_high_20
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_high_20 |
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| [»] scaffold1033 (2 HSPs) |
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| [»] scaffold1029 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 28568846 - 28569039
Alignment:
| Q |
1 |
gccaatgcttgttatagtatgttgcatatgtgtattgcaacacattattttatcagtagtttttcttttgtaagacattaatttattagttatagttttc |
100 |
Q |
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| T |
28568846 |
gccaatgcttgttatagtatgttgcatatgtgtattgtaacacattattttattagtagtttttcttttgtaagacattaatttattagttatagttttc |
28568945 |
T |
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| Q |
101 |
caatgcttgttatagtatgctgcatatgtgtattgtaacacattattttattagttatagtttggcaatgcttgttatagtatgttgatgatgt |
194 |
Q |
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| T |
28568946 |
caatgcttgttatagtatgctgcatatgtgtattgtaacatattattttattagttatagttgggcaatgcttgttatagtatgttgctgatgt |
28569039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 28568815 - 28568902
Alignment:
| Q |
68 |
ttgtaagacattaatttattagttatagttttccaatgcttgttatagtatgctgcatatgtgtattgtaacacattattttattagt |
155 |
Q |
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| T |
28568815 |
ttgtaagacattaatttattagttatagtttgccaatgcttgttatagtatgttgcatatgtgtattgtaacacattattttattagt |
28568902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 28568797 - 28568869
Alignment:
| Q |
115 |
gtatgctgcatatgtgtattgtaacacattattttattagttatagtttggcaatgcttgttatagtatgttg |
187 |
Q |
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| T |
28568797 |
gtatgctgcatatgtgtattgtaagacattaatttattagttatagtttgccaatgcttgttatagtatgttg |
28568869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 2909 - 2818
Alignment:
| Q |
17 |
gtatgttgcatatgtgtattgcaacacattattttatcagtagtttttcttttgtaagacattaatttattagttatagttttccaatgcttgttatagt |
116 |
Q |
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| T |
2909 |
gtatgctgcatatgtgtattgtaacacattaatttattagtagtttttcttttgt---------atttattagttatattttgccaatgcttgttatagt |
2819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 2909 - 2869
Alignment:
| Q |
115 |
gtatgctgcatatgtgtattgtaacacattattttattagt |
155 |
Q |
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| T |
2909 |
gtatgctgcatatgtgtattgtaacacattaatttattagt |
2869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 2909 - 2818
Alignment:
| Q |
17 |
gtatgttgcatatgtgtattgcaacacattattttatcagtagtttttcttttgtaagacattaatttattagttatagttttccaatgcttgttatagt |
116 |
Q |
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| T |
2909 |
gtatgctgcatatgtgtattgtaacacattaatttattagtagtttttcttttgt---------atttattagttatattttgccaatgcttgttatagt |
2819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 2909 - 2869
Alignment:
| Q |
115 |
gtatgctgcatatgtgtattgtaacacattattttattagt |
155 |
Q |
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| T |
2909 |
gtatgctgcatatgtgtattgtaacacattaatttattagt |
2869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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