View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5008_high_4 (Length: 499)
Name: NF5008_high_4
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 481
Target Start/End: Complemental strand, 33274475 - 33274005
Alignment:
| Q |
11 |
cagagagcaggaatttcagtaaccaacaaaggaggaaaattcaaaggaagaaacagaaacagcaacaacacaaacaagtttgttggtgttagacaaaggc |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
33274475 |
cagaaagcaggaatttcagtaaccaacaaaggaggaaaattcaaaggaagaaacagaaacagcaataacacaaacaagtttgttggtgttaggcaaaggc |
33274376 |
T |
|
| Q |
111 |
catcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274375 |
catcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatga |
33274276 |
T |
|
| Q |
211 |
tgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgcttccaggataagaaatcttctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274275 |
tgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcctcttgcttccaggataagaaatcttctt |
33274176 |
T |
|
| Q |
311 |
aacaacagaaaaggcgacaaaaaacaggaagatggcgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaagca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274175 |
aacaacagaaaaggcgacaaaaaacaggaagatggtgctgttgcttctgctccaagtaacagcaaaactaccattagtaatactagtacaattacaagca |
33274076 |
T |
|
| Q |
411 |
atgatgataacaaggagagcactctttcgacctgtgctactcgaaatacagaactatttgaggatgcttac |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33274075 |
atgatgataacaaggagagcactctttcgacctgtgctactcgaaatacagaactatttgaggatgcttac |
33274005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 3160216 - 3160376
Alignment:
| Q |
89 |
tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg |
188 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||||||||||||| | ||| | ||||| ||||| ||||||| |
|
|
| T |
3160216 |
tttgttggtgtgagacaaaggccatcaggaagatgggtagctgagataaaagataccattcagaagataagagtttggttaggaacttttgatacagctg |
3160315 |
T |
|
| Q |
189 |
aggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaac |
249 |
Q |
| |
|
| ||||| || ||||| ||||||||||||||||| | ||||| ||||| |||||| |||| |
|
|
| T |
3160316 |
aagaagctgcaagagcctatgatgaagctgcatgtatacttcgcggttccaacactagaac |
3160376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 84 - 322
Target Start/End: Original strand, 10029918 - 10030156
Alignment:
| Q |
84 |
acaagtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagac |
183 |
Q |
| |
|
||||||||||||| || |||||||| |||||||| |||| || |||||||| || |||||||| || || |||||||||||||||||||||||||| || |
|
|
| T |
10029918 |
acaagtttgttggggtgagacaaagaccatcaggtagatatgttgctgagataaaggacacaacacaaaacataagaatgtggcttggaacatttgaaac |
10030017 |
T |
|
| Q |
184 |
agctgaggaagcagctagagcttatgatgaagctgcatgccttcttcgaggttcgaacactcgaaccaacttcatcactcatgtctcattggattctcct |
283 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || |||||||| ||||| || ||||| ||||||||| |||| ||||| || | ||||| ||| |
|
|
| T |
10030018 |
agctgaggaagcagcaagagcttatgatgaagccgcgacacttcttcgcggttccaaaactcgtaccaacttcgtcacacatgtttcttatgattcccct |
10030117 |
T |
|
| Q |
284 |
cttgcttccaggataagaaatcttcttaacaacagaaaa |
322 |
Q |
| |
|
|| ||||| |||| || ||||||| |||||| ||||| |
|
|
| T |
10030118 |
ctcgcttctcggattcgacatcttctcaacaaccgaaaa |
10030156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 4038684 - 4038814
Alignment:
| Q |
89 |
tttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctg |
188 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||| |||||||| ||||| || | ||| ||||||||| | ||| | ||||| ||||| ||||||| |
|
|
| T |
4038684 |
tttgttggcgttcgacaaaggccatcgggtagatgggttgctgagattaaagataccattcaaaagataagagtttggttaggaacttttgatacagctg |
4038783 |
T |
|
| Q |
189 |
aggaagcagctagagcttatgatgaagctgc |
219 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||| |
|
|
| T |
4038784 |
aagaagctgctagagcttatgatgaggctgc |
4038814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 10554660 - 10554724
Alignment:
| Q |
157 |
aagaatgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgcat |
221 |
Q |
| |
|
|||| |||||||||| || ||||| |||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
10554660 |
aagagtgtggcttggcacctttgaaacagctgaagctgcagctactgcttatgatgaagctgcat |
10554724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 12508734 - 12508608
Alignment:
| Q |
93 |
ttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgagga |
192 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||| | ||||| | ||||||||||| | ||| ||| | || || |
|
|
| T |
12508734 |
ttggtgtgagacaaaggccatcaggtagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaaga |
12508635 |
T |
|
| Q |
193 |
agcagctagagcttatgatgaagctgc |
219 |
Q |
| |
|
||| ||| ||||||| || |||||||| |
|
|
| T |
12508634 |
agctgctcgagcttacgacgaagctgc |
12508608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 35665872 - 35666005
Alignment:
| Q |
86 |
aagtttgttggtgttagacaaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacag |
185 |
Q |
| |
|
||||||||||| || |||||||| | ||||| | ||||| ||| ||||| ||||||||| | |||| || || ||||||||||| || | | | || | |
|
|
| T |
35665872 |
aagtttgttggagtgagacaaagagcttcaggaaaatgggcagcagagataaaagacacatcaaagaacattaggatgtggcttggtacctataaaactg |
35665971 |
T |
|
| Q |
186 |
ctgaggaagcagctagagcttatgatgaagctgc |
219 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
35665972 |
ctgaggaagctgctcgagcttacgatgaagctgc |
35666005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 2428725 - 2428679
Alignment:
| Q |
170 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
2428725 |
ggaacatttgagacagctgaagaagcagctagagcatatgatgaagc |
2428679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 32072592 - 32072708
Alignment:
| Q |
104 |
caaaggccatcagggagatgggtagctgagatcaaagacacaactcagaagataagaatgtggcttggaacatttgagacagctgaggaagcagctagag |
203 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||| | ||||| |||||| ||||| | || || | ||| || | ||| || || ||||||| |
|
|
| T |
32072592 |
caaagaccttcagggagatgggtggctgagatcaaagacaccatacagaacataagattgtggttggggacctatgacactggtgaagaggctgctagag |
32072691 |
T |
|
| Q |
204 |
cttatgatgaagctgca |
220 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
32072692 |
cttatgatgaggctgca |
32072708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 46024060 - 46024098
Alignment:
| Q |
104 |
caaaggccatcagggagatgggtagctgagatcaaagac |
142 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46024060 |
caaaggccatcaggaagatggatagctgagatcaaagac |
46024098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 46265307 - 46265269
Alignment:
| Q |
104 |
caaaggccatcagggagatgggtagctgagatcaaagac |
142 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46265307 |
caaaggccatcaggaagatggatagctgagatcaaagac |
46265269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 47101407 - 47101350
Alignment:
| Q |
162 |
tgtggcttggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc |
219 |
Q |
| |
|
||||||| ||||||||||| ||||| || |||||||| ||||| |||||| ||||||| |
|
|
| T |
47101407 |
tgtggctaggaacatttgaaacagcagaagaagcagcaagagcatatgatcaagctgc |
47101350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 15403650 - 15403688
Alignment:
| Q |
173 |
acatttgagacagctgaggaagcagctagagcttatgat |
211 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
15403650 |
acatttgacacagctgaagaagcagctagagcttatgat |
15403688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 44648732 - 44648686
Alignment:
| Q |
170 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagc |
216 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
44648732 |
ggaacatttgaaacagctgaagaagcagctaaagcatatgatgaagc |
44648686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 43490124 - 43490075
Alignment:
| Q |
170 |
ggaacatttgagacagctgaggaagcagctagagcttatgatgaagctgc |
219 |
Q |
| |
|
||||||||||| |||||||| | ||| |||||||| |||||||||||||| |
|
|
| T |
43490124 |
ggaacatttgaaacagctgaagcagctgctagagcatatgatgaagctgc |
43490075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University