View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5008_high_8 (Length: 414)

Name: NF5008_high_8
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5008_high_8
NF5008_high_8
[»] chr3 (14 HSPs)
chr3 (82-414)||(28568478-28568819)
chr3 (27-146)||(28580308-28580427)
chr3 (25-145)||(26316311-26316430)
chr3 (164-261)||(3571995-3572092)
chr3 (166-248)||(49090936-49091018)
chr3 (163-248)||(45910872-45910957)
chr3 (25-146)||(28575253-28575378)
chr3 (165-248)||(1423203-1423286)
chr3 (164-259)||(20590981-20591076)
chr3 (25-73)||(28586463-28586511)
chr3 (262-323)||(28580460-28580528)
chr3 (164-200)||(44903046-44903082)
chr3 (270-304)||(26316472-26316506)
chr3 (106-146)||(28586531-28586571)
[»] chr7 (6 HSPs)
chr7 (164-263)||(21370678-21370777)
chr7 (174-263)||(18111190-18111279)
chr7 (164-261)||(11364845-11364942)
chr7 (164-261)||(40644605-40644702)
chr7 (164-254)||(36057163-36057252)
chr7 (170-242)||(2476497-2476568)
[»] chr6 (8 HSPs)
chr6 (164-263)||(11767211-11767310)
chr6 (162-263)||(22818266-22818367)
chr6 (164-261)||(4062408-4062505)
chr6 (173-248)||(13181364-13181439)
chr6 (164-220)||(17972074-17972130)
chr6 (175-248)||(17386011-17386084)
chr6 (20-63)||(24071929-24071972)
chr6 (262-302)||(24072080-24072120)
[»] scaffold0003 (1 HSPs)
scaffold0003 (163-263)||(146658-146758)
[»] chr5 (2 HSPs)
chr5 (164-263)||(3277846-3277944)
chr5 (164-261)||(34504523-34504620)
[»] chr2 (4 HSPs)
chr2 (164-258)||(29997965-29998059)
chr2 (164-261)||(45532935-45533032)
chr2 (164-248)||(19674567-19674651)
chr2 (175-248)||(28841988-28842060)
[»] scaffold1033 (2 HSPs)
scaffold1033 (21-146)||(3086-3207)
scaffold1033 (319-414)||(2887-2982)
[»] scaffold1029 (2 HSPs)
scaffold1029 (21-146)||(3086-3207)
scaffold1029 (319-414)||(2887-2982)
[»] chr8 (4 HSPs)
chr8 (164-251)||(28178830-28178917)
chr8 (164-248)||(13704272-13704356)
chr8 (164-248)||(42796322-42796406)
chr8 (167-235)||(9293800-9293868)
[»] chr1 (4 HSPs)
chr1 (164-251)||(27300436-27300523)
chr1 (164-263)||(41077858-41077958)
chr1 (164-248)||(34079821-34079905)
chr1 (165-211)||(29548329-29548375)
[»] scaffold0462 (1 HSPs)
scaffold0462 (164-261)||(11538-11635)
[»] chr4 (6 HSPs)
chr4 (177-261)||(7652695-7652779)
chr4 (172-248)||(9808781-9808857)
chr4 (164-248)||(9810467-9810551)
chr4 (164-218)||(17034488-17034542)
chr4 (182-259)||(9101985-9102062)
chr4 (180-248)||(17787336-17787404)
[»] scaffold0889 (2 HSPs)
scaffold0889 (319-402)||(4185-4268)
scaffold0889 (82-134)||(4358-4410)
[»] scaffold0870 (2 HSPs)
scaffold0870 (319-402)||(4389-4472)
scaffold0870 (82-134)||(4562-4614)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 82 - 414
Target Start/End: Original strand, 28568478 - 28568819
Alignment:
Q  82 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc---------aaattaaaacagacttgcactagtac 172  Q
    |||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| ||||||||||    
T  28568478 aaatttagaatagctgtatatattcgtacttcaattaaaatacttaccattctagaaattaatgctttgatagtaaattaaaacagactcgcactagtac 28568577  T
Q  173 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgatagctgggga 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28568578 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgatagctgggga 28568677  T
Q  273 tattgttaagatatgaagtggtttgctatagctcaagaaagatggttatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaa 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28568678 tattgttaagatatgaagtggtttgctatagctcaagaaagatggttatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaa 28568777  T
Q  373 tgattgaaggtcagcatatgtatgctgcatatgtgtattgta 414  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28568778 tgattgaaggtcagcatatgtatgctgcatatgtgtattgta 28568819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 28580308 - 28580427
Alignment:
Q  27 tcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatactt 126  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  28580308 tcctgaaaatgtaaaagtgtagattgatcagaacattgcaataaaaagatattctaaatttagaacaattgtatatatttgtacttcaattaaaatactt 28580407  T
Q  127 accattctagaaattaatgc 146  Q
    |||||||| |||||||||||    
T  28580408 accattctggaaattaatgc 28580427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 26316311 - 26316430
Alignment:
Q  25 catcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatac 124  Q
    ||||||||||||||||||||||||| | || ||||||||| |||||||  |||||| |||| |||||||| | |||||||||||||||||||||||||||    
T  26316311 catcctgaaaatgtaaaagtgcagaatgatgagaacattgaaataaaat-atattgtaaatctagaacaactttatatatttgtacttcaattaaaatac 26316409  T
Q  125 ttaccattctagaaattaatg 145  Q
    ||||||||||| |||||||||    
T  26316410 ttaccattctataaattaatg 26316430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 3572092 - 3571995
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  3572092 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 3571995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 49090936 - 49091018
Alignment:
Q  166 ctagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||    
T  49090936 ctagtgcagaaaacactttttaaatcaggtaaaaaagactttttaaatcggttctccacccgacttataggtggccgatttaa 49091018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 45910872 - 45910957
Alignment:
Q  163 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  45910872 gcactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 45910957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 28575253 - 28575378
Alignment:
Q  25 catcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaat----ttagaacaattgtatatatttgtacttcaattaaa 120  Q
    ||||||||||| || |||||||||||| |||||||||||| ||||||   || ||| || |    |||||| || ||||||||||||||||||| |||||    
T  28575253 catcctgaaaaagtcaaagtgcagattgatcagaacattgaaataaagctatgttgtaactaagtttagaataactgtatatatttgtacttcagttaaa 28575352  T
Q  121 atacttaccattctagaaattaatgc 146  Q
    ||||||||||||||||||||||||||    
T  28575353 atacttaccattctagaaattaatgc 28575378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 1423203 - 1423286
Alignment:
Q  165 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  1423203 actagtacagaaatcactttttaaatggggtgaaaatgactttttaaatcggttgtacatccgacttataggtggccgatttaa 1423286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 20590981 - 20591076
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctt 259  Q
    ||||||| |||||||||| ||||||||||||| ||  |||||||||||||||| | |  |||||| |||||||| |||||||||||||| ||||||    
T  20590981 cactagtgcagaaaacaccttttaaatcaggtgaatttgactttttaaatcgggtgatcatccgatttataggtagccgatttaaaaaattgtctt 20591076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 28586463 - 28586511
Alignment:
Q  25 catcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaa 73  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  28586463 catcctgaaaatgtaaaagtgcagattgatcagaatattgaaataaaaa 28586511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 28580460 - 28580528
Alignment:
Q  262 atagctggggatattgttaagatatgaa-------gtggtttgctatagctcaagaaagatggttattt 323  Q
    ||||||||||||||||||||||| ||||       |||||||||||||||||||| |||||||||||||    
T  28580460 atagctggggatattgttaagatgtgaactgtgaagtggtttgctatagctcaaggaagatggttattt 28580528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 44903046 - 44903082
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaa 200  Q
    ||||||| |||||||||||||||||||||||||||||    
T  44903046 cactagtgcagaaaacactttttaaatcaggtaaaaa 44903082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 26316472 - 26316506
Alignment:
Q  270 ggatattgttaagatatgaagtggtttgctatagc 304  Q
    ||||||||||||||| |||||||||||||||||||    
T  26316472 ggatattgttaagatgtgaagtggtttgctatagc 26316506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 28586531 - 28586571
Alignment:
Q  106 tgtacttcaattaaaatacttaccattctagaaattaatgc 146  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  28586531 tgtactccaattaaattacttaccattctggaaattaatgc 28586571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 21370678 - 21370777
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21370678 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 21370777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 18111190 - 18111279
Alignment:
Q  174 gaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 263  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  18111190 gaaaacactttttaaatcagatgaaaatgactttttaaatcggttcatgatccgatttataggtggccgatttaaaaaactgtctttgat 18111279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 11364942 - 11364845
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||| ||||||||||||||| ||||||||||||||||    
T  11364942 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgatttataggtggccgatgtaaaaaactgtctttg 11364845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 40644605 - 40644702
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| ||||||| | |||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  40644605 cactagtgcagaaaatattttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 40644702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 36057252 - 36057163
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaact 254  Q
    |||||||||| ||||||||||||||||  ||| | | |||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  36057252 cactagtacaaaaaacactttttaaatggggtgata-tgactttttaaatcgggtcacgatccgacttataggtggccgatttaaaaaact 36057163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 2476568 - 2476497
Alignment:
Q  170 tacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccg 242  Q
    ||||||||| |||||||||||  ||| ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2476568 tacagaaaatactttttaaatggggtgaaaatgactttttaagtcggttc-atatccgacttataggtggccg 2476497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 11767310 - 11767211
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11767310 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 11767211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 22818266 - 22818367
Alignment:
Q  162 tgcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    |||||| ||| |||||| |||| ||||||  ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  22818266 tgcactggtatagaaaatacttcttaaatggggtgaaaatgactttttaaataggttcatgatccgacttataggtggccgatttaaaaaaatgtctttg 22818365  T
Q  262 at 263  Q
    ||    
T  22818366 at 22818367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 4062505 - 4062408
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||| ||||||||| ||||||    
T  4062505 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatgtaaaaaactatctttg 4062408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 13181439 - 13181364
Alignment:
Q  173 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  13181439 agaaaaaactttttaaattaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 13181364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 17972074 - 17972130
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttca 220  Q
    |||||| ||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  17972074 cactagcacagaaaacactttttaaatggggtgaaaatgaatttttaaatcggttca 17972130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 17386011 - 17386084
Alignment:
Q  175 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||   |||||| |||||| ||| ||||||||    
T  17386011 aaaacactttttaaatggggcgaaaatgactttttaaatcggttctgtatccgatttatagatggtcgatttaa 17386084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 24071929 - 24071972
Alignment:
Q  20 agtagcatcctgaaaatgtaaaagtgcagattaatcagaacatt 63  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||    
T  24071929 agtaacatcctgaaaatgtaaaagtgcatattgatcagaacatt 24071972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 24072080 - 24072120
Alignment:
Q  262 atagctggggatattgttaagatatgaagtggtttgctata 302  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  24072080 atagttggagatattgttaagatgtgaagtggtttgctata 24072120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 163 - 263
Target Start/End: Complemental strand, 146758 - 146658
Alignment:
Q  163 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttga 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  146758 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttaaagatccgacttataggtggccgatttaaaaaactgtctttga 146659  T
Q  263 t 263  Q
    |    
T  146658 t 146658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 3277944 - 3277846
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttgat 263  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  3277944 cactagtgcagaaaacactttttaaatcaggtgaaaatgactttttaaatc-gttcatgatccgacttataggtggccgatttaaaaaactgtctatgat 3277846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 34504620 - 34504523
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||    
T  34504620 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgtctttg 34504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 164 - 258
Target Start/End: Complemental strand, 29998059 - 29997965
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtct 258  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29998059 cactagtgcagaaaacactttttaaagcgggtgaaaatgactttttaaatcagttcatgatccgacttataggtggccgatttaaaaaactgtct 29997965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 45533032 - 45532935
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||| ||||||||||||||||    
T  45533032 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatgtaaaaaactgtctttg 45532935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 19674567 - 19674651
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  19674567 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 19674651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 28842060 - 28841988
Alignment:
Q  175 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    |||||||||||||| |  ||| ||||||||||||||| ||||||| | |||||||||||||||| |||| ||||    
T  28842060 aaaacactttttaagtggggtgaaaatgactttttaagtcggttc-atatccgacttataggtgaccgacttaa 28841988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 3207 - 3086
Alignment:
Q  21 gtagcatcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaa 120  Q
    ||||||||||||||||||||||||||||||| ||||| || ||| |||||||   ||||  |||||| |||||  |||||||||||||||||||||||||    
T  3207 gtagcatcctgaaaatgtaaaagtgcagattgatcagtactttgaaataaaa---tattttaaattt-gaacagctgtatatatttgtacttcaattaaa 3112  T
Q  121 atacttaccattctagaaattaatgc 146  Q
    |||||||||||||| |||||||||||    
T  3111 atacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 414
Target Start/End: Complemental strand, 2982 - 2887
Alignment:
Q  319 tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcatatgtgtattgta 414  Q
    ||||||||| | |||||||||||   ||  ||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2982 tatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtgtattgta 2887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 3207 - 3086
Alignment:
Q  21 gtagcatcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaa 120  Q
    ||||||||||||||||||||||||||||||| ||||| || ||| |||||||   ||||  |||||| |||||  |||||||||||||||||||||||||    
T  3207 gtagcatcctgaaaatgtaaaagtgcagattgatcagtactttgaaataaaa---tattttaaattt-gaacagctgtatatatttgtacttcaattaaa 3112  T
Q  121 atacttaccattctagaaattaatgc 146  Q
    |||||||||||||| |||||||||||    
T  3111 atacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 414
Target Start/End: Complemental strand, 2982 - 2887
Alignment:
Q  319 tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcatatgtgtattgta 414  Q
    ||||||||| | |||||||||||   ||  ||||||||| |||| | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2982 tatttatagtttaacattgcacacgatttttatttgttattttgggttactgaatgattgaaggtcaacatatgtatgctgcatatgtgtattgta 2887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 28178917 - 28178830
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaa 251  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||||||||    
T  28178917 cactagtacagaaaacactttttaaatcaggtgaaaataactttttaagtcggttctggatccgatttataggtggccgatttaaaaa 28178830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 13704356 - 13704272
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||||||    
T  13704356 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgatttaa 13704272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 42796406 - 42796322
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||| || || |||||||||||||||||| |||||||| ||||||||||||||   |||||| ||||||||||| |||||||    
T  42796406 cactagtgcaaaatacactttttaaatcaggtgaaaatgaccttttaaatcggttctgtatccgatttataggtggcagatttaa 42796322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 9293868 - 9293800
Alignment:
Q  167 tagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttatag 235  Q
    ||||| ||||||||||||||||||  |   |||||||||||||||||||||||| ||||||| ||||||    
T  9293868 tagtatagaaaacactttttaaatgggaagaaaatgactttttaaatcggttcatgatccgatttatag 9293800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 27300523 - 27300436
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaa 251  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| ||||||||||||||||||||||    
T  27300523 cactagtacagaaaacactttttaaatcaggtgaaaattactttttaagtcggttctggatccgatttataggtggccgatttaaaaa 27300436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 41077958 - 41077858
Alignment:
Q  164 cactagtacagaaaacactttttaaatcagg-taaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttga 262  Q
    |||||||||||||||||||||||||||  || | ||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||  |||||||||    
T  41077958 cactagtacagaaaacactttttaaatgggggtgaaaatgactttgtaaatccattcatgatccgacttataggtggccgatttaaaaacttgtctttga 41077859  T
Q  263 t 263  Q
    |    
T  41077858 t 41077858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 34079905 - 34079821
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    ||| || |||||||||||||||||||    
T  34079905 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttatgtatctgatttataggtggccgatttaa 34079821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 29548329 - 29548375
Alignment:
Q  165 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaa 211  Q
    ||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  29548329 actagtatagaaaacactttttaaatagggtgaaaatgactttttaa 29548375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 11538 - 11635
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||||||| || | |  ||||||  |||||||||| ||||||||||||||||||||    
T  11538 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaattgggtgatcatccgatgtataggtggctgatttaaaaaactgtctttg 11635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 7652695 - 7652779
Alignment:
Q  177 aacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctttg 261  Q
    ||||||||||||||||||| ||  |||| ||||||||||| | |  ||||||||||||||||||||||||||||||||| |||||    
T  7652695 aacactttttaaatcaggtgaatttgaccttttaaatcgggtgaccatccgacttataggtggccgatttaaaaaactgcctttg 7652779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 9808857 - 9808781
Alignment:
Q  172 cagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |  ||||| || ||||||||||||||||    
T  9808857 cagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctatttccgatttgtaggtggccgatttaa 9808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 9810551 - 9810467
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaa 248  Q
    ||||||| |||||||||||||||||||||||| |||| || ||||||||||||||    |||||| |||||||||||||||||||    
T  9810551 cactagtgcagaaaacactttttaaatcaggtgaaaaagaatttttaaatcggttttgtatccgatttataggtggccgatttaa 9810467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 17034542 - 17034488
Alignment:
Q  164 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggtt 218  Q
    ||||||||||||||||||||||||| || | | ||||||||||||||||||||||    
T  17034542 cactagtacagaaaacactttttaagtcggatgaaaatgactttttaaatcggtt 17034488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 9101985 - 9102062
Alignment:
Q  182 tttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatttaaaaaactgtctt 259  Q
    |||||||||||||| ||  |||||||||||||||| | |  ||| ||  |||||||||||||||||||||||||||||    
T  9101985 tttttaaatcaggtgaatttgactttttaaatcgggtgatcatctgatgtataggtggccgatttaaaaaactgtctt 9102062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 17787336 - 17787404
Alignment:
Q  180 actttttaaatcaggtaaaaatgactttttaaatcggttcaag-atccgacttataggtggccgatttaa 248  Q
    |||||||||||  ||| |||||||||||||||||| || || | ||||||||||||||||||||||||||    
T  17787336 actttttaaatggggtgaaaatgactttttaaatcagt-catgtatccgacttataggtggccgatttaa 17787404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 4268 - 4185
Alignment:
Q  319 tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcat 402  Q
    ||||||||| | |||||||||||| ||| ||||||| |  |||||||||||||||||||||||||||  |||||||||| ||||    
T  4268 tatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcat 4185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 4410 - 4358
Alignment:
Q  82 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 134  Q
    |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4410 aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 4472 - 4389
Alignment:
Q  319 tatttatagctgaacattgcacatagttgatatttgttagtttgagctactgaatgattgaaggtcagcatatgtatgctgcat 402  Q
    ||||||||| | |||||||||||| ||| ||||||| |  |||||||||||||||||||||||||||  |||||||||| ||||    
T  4472 tatttatagtttaacattgcacatggttcatatttgctcttttgagctactgaatgattgaaggtcaaaatatgtatgcagcat 4389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 4614 - 4562
Alignment:
Q  82 aaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 134  Q
    |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4614 aaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4562  T

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