View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_low_1 (Length: 674)
Name: NF5008_low_1
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 17 - 656
Target Start/End: Complemental strand, 15131442 - 15130804
Alignment:
| Q |
17 |
ccatatacttggccaattcttcaaatggaattgccacgtagacaccaaaaatcgcatgcacaccaaaaatggatttttatgcattcttctattgtaagta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15131442 |
ccatatacttggccaattcttcaaatggaattgccacgtagacaccaaaaatcgcatgcacaccaaaaatggatttttatgcattcttctattgtaagta |
15131343 |
T |
|
| Q |
117 |
gcttatgctttttaacttttattagggtcaaataatagnnnnnnnctaaattaattccactatactcttcctcatgtgcatgcaagcttctctcaccttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15131342 |
gcttatgctttttaacttttattagggtcaaataatagaaaaaa-ctaaattaattccactatactcttcctcatgtgcatgcaagcttctctcaccttt |
15131244 |
T |
|
| Q |
217 |
taccacttttgcggcgtcaacttctcccccaacatcttattataaacccctatatcttccccttcattttctaccaacataccaaattaaacacaagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15131243 |
taccacttttgcggcgtcaacttctcccccaacatcttattataaacccctatatcttccccttcattttctaccaacataccaaattaaacacaagaaa |
15131144 |
T |
|
| Q |
317 |
atacaacacatttctccttcttataagtcttttactatctctttcaactggcaaagccatggggttcctaaaagcaataataatcatagcaataaccatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15131143 |
atacaacacatttctccttcttataagtcttttactatctctttcaactggcaaagccatggggttcctaaaagcaataataatcatagcaataaccatg |
15131044 |
T |
|
| Q |
417 |
gctttgtccctcactatcacaatgaaaaccatcacacaaaacgaacccaaatcggtatcggttcatcacgattctctctcccaagggcaacaaccactaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15131043 |
gctttgtccctcactatcacaatgaaaaccatcacacaaaacgaacccaaatcgttatcggttcatcacgattctctctcccaagggcaacaaccactaa |
15130944 |
T |
|
| Q |
517 |
tcctccatgagaaaaacaagtttctcccttcaaagagggtaagtcgcctcctagctcaaaaccctaatgcacctattcattgtcacaaacaagatgaaat |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15130943 |
tcctccatgagaaaaacaagtttctcccttcaaagagggtaagtcgcctcctagctcaaaaccctaatgcacctattcattgtcacaaacaagatgaaat |
15130844 |
T |
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| Q |
617 |
atgcgacttatatggcgccaagaacgcaacatgttgcaac |
656 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |
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| T |
15130843 |
atgcgacttatatggcgccaagaacgcgacatgttgcaac |
15130804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 358 - 656
Target Start/End: Complemental strand, 21154364 - 21154081
Alignment:
| Q |
358 |
tttcaactggcaaagccatggggttcctaaaagcaataataatcatagcaataaccatggctttgtccctcactatcacaatgaaaaccatcacacaaaa |
457 |
Q |
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||||||| |||||||||||| |||||||||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||||| || || |
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| T |
21154364 |
tttcaaccggcaaagccatgaggttcctaaaagcaatcatcatcatagcaataacattggctttgtccctcacaatcacaatgaaaaccatcaagcataa |
21154265 |
T |
|
| Q |
458 |
cgaacccaaatcggtatcggttcatcacgattctctctcccaagggcaacaaccactaatcctccatgagaaaaacaagtttctcccttcaaagagggta |
557 |
Q |
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| T |
21154264 |
cgaatcgaaaccggcatcgattcatctagaa----------aag-----caaccactaatcctccatgagaaaaacaagtttcttccttcaaagagggta |
21154180 |
T |
|
| Q |
558 |
agtcgcctcctagctcaaaaccctaatgcacctattcattgtcacaaacaagatgaaatatgcgacttatatggcgccaagaacgcaacatgttgcaac |
656 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |||||||||||| |
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| T |
21154179 |
agtcgtctcctagctcaaaaccctaatgcacctattcattgtcacaagcaagatgagatttgctacttatatggcgccaagaacgctacatgttgcaac |
21154081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 21154533 - 21154441
Alignment:
| Q |
207 |
tctcaccttttaccacttttgcggcgtcaact--tctcccccaacatcttattata--aacccctatatcttccccttcattttctaccaaca |
295 |
Q |
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||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||| |||||||||||||||| ||| |||||||||||||| |
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| T |
21154533 |
tctcaccttttgccacttttgcagcgtcaactattctcccccaacacattactatataaacccctatatcttcctcttaattttctaccaaca |
21154441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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