View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5008_low_10 (Length: 350)

Name: NF5008_low_10
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5008_low_10
NF5008_low_10
[»] chr3 (8 HSPs)
chr3 (13-158)||(34651497-34651638)
chr3 (208-292)||(34649728-34649812)
chr3 (296-332)||(2134945-2134981)
chr3 (297-337)||(42636557-42636597)
chr3 (296-337)||(21221529-21221570)
chr3 (296-337)||(29584750-29584791)
chr3 (296-332)||(40083196-40083232)
chr3 (296-332)||(47958606-47958642)
[»] chr2 (10 HSPs)
chr2 (296-340)||(37004041-37004085)
chr2 (296-340)||(30798659-30798703)
chr2 (296-337)||(2085946-2085987)
chr2 (296-337)||(4641390-4641431)
chr2 (296-337)||(9717115-9717156)
chr2 (296-337)||(18685710-18685751)
chr2 (296-337)||(35114659-35114700)
chr2 (296-337)||(44284511-44284552)
chr2 (296-340)||(17540588-17540632)
chr2 (296-332)||(33366484-33366520)
[»] chr4 (12 HSPs)
chr4 (296-337)||(43640976-43641017)
chr4 (296-340)||(49152264-49152308)
chr4 (296-337)||(12600763-12600804)
chr4 (296-337)||(23521757-23521798)
chr4 (296-337)||(24002215-24002256)
chr4 (296-337)||(33552995-33553036)
chr4 (296-337)||(36885823-36885864)
chr4 (296-337)||(42869859-42869900)
chr4 (296-332)||(2725290-2725326)
chr4 (296-340)||(21579903-21579947)
chr4 (299-335)||(28115157-28115193)
chr4 (296-340)||(56154498-56154542)
[»] chr1 (9 HSPs)
chr1 (296-337)||(44738291-44738332)
chr1 (296-340)||(39281778-39281822)
chr1 (296-337)||(844974-845015)
chr1 (296-337)||(26118450-26118491)
chr1 (296-337)||(26765039-26765080)
chr1 (296-337)||(30105915-30105956)
chr1 (296-337)||(41972795-41972836)
chr1 (296-337)||(42510408-42510449)
chr1 (296-340)||(50540227-50540271)
[»] scaffold0280 (1 HSPs)
scaffold0280 (299-341)||(13863-13905)
[»] scaffold0208 (1 HSPs)
scaffold0208 (296-337)||(2519-2560)
[»] scaffold0098 (1 HSPs)
scaffold0098 (296-337)||(51313-51354)
[»] chr8 (8 HSPs)
chr8 (296-337)||(4052371-4052412)
chr8 (296-337)||(14005219-14005260)
chr8 (296-337)||(27103833-27103874)
chr8 (296-337)||(32020191-32020232)
chr8 (296-337)||(32303775-32303816)
chr8 (296-337)||(35225537-35225578)
chr8 (296-337)||(37861770-37861811)
chr8 (296-340)||(31731938-31731982)
[»] chr7 (3 HSPs)
chr7 (296-337)||(3922879-3922920)
chr7 (296-337)||(32873945-32873986)
chr7 (297-337)||(18470563-18470603)
[»] chr6 (3 HSPs)
chr6 (296-337)||(15277151-15277192)
chr6 (297-337)||(4494312-4494352)
chr6 (300-340)||(32410063-32410103)
[»] chr5 (7 HSPs)
chr5 (296-337)||(2351554-2351595)
chr5 (296-337)||(4818321-4818362)
chr5 (296-329)||(7725997-7726030)
chr5 (296-337)||(31880242-31880283)
chr5 (296-337)||(35701151-35701192)
chr5 (296-332)||(6284485-6284521)
chr5 (297-337)||(11963216-11963256)
[»] scaffold0014 (1 HSPs)
scaffold0014 (296-340)||(101823-101867)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 34651638 - 34651497
Alignment:
Q  13 aaaacaacaacatgaacaatcacaatataggtttggttaaatggaatggagggaagggggagggagaaatgttaaaatattgtgttttgttctagcaagg 112  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34651638 aaaacaacaacatgaacaatcacaatataggtttgg----atggaatggagggaagggggagggagaaatgttaaaatattgtgttttgttctagcaagg 34651543  T
Q  113 taaaaaatatgagattttataataaagaaaagatagatttaaaata 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34651542 taaaaaatatgagattttataataaagaaaagatagatttaaaata 34651497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 34649812 - 34649728
Alignment:
Q  208 tagatcagtcgagttcaaaccccaatcacatatttattctaacaattttaatattttatcaattgagtaaccagttgtggactaa 292  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34649812 tagatgagtcgagttcaaaccccaatcacatatttattctaacaattttaatattttatcaattgagtaatcagttgtggactaa 34649728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 2134945 - 2134981
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2134945 tgtgtttggtttgcaaaacagcaagtactagacagaa 2134981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 42636597 - 42636557
Alignment:
Q  297 gtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  42636597 gtgtttggtttgcaaaacaacaagtactagacagaatagta 42636557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 21221570 - 21221529
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  21221570 tgtgtttggtttgcaatacagcaagtactagacagaacagta 21221529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 29584750 - 29584791
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  29584750 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 29584791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 40083196 - 40083232
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    ||||||||  |||||||||||||||||||||||||||    
T  40083196 tgtgtttggcttgcaaaacagcaagtactagacagaa 40083232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 47958642 - 47958606
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    |||||||| |||||||||||||||||||| |||||||    
T  47958642 tgtgtttggtttgcaaaacagcaagtactggacagaa 47958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 37004085 - 37004041
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  37004085 tgtgtttggtttgcaaaacagcaagtactagacagaacagtataa 37004041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 30798703 - 30798659
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||    
T  30798703 tgtgtttggtttgcaaaacagcaagtactggacagaacagtataa 30798659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 2085946 - 2085987
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2085946 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2085987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 4641390 - 4641431
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4641390 tgtgtttgctttgcaaaacagcaagtactggacagaacagta 4641431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 9717115 - 9717156
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  9717115 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 9717156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 18685710 - 18685751
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  18685710 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 18685751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 35114659 - 35114700
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  35114659 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 35114700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 44284511 - 44284552
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  44284511 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 44284552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 17540588 - 17540632
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||||||||||| || |||| |||||||    
T  17540588 tgtgtttggtttgcaaaacagcaagtactggatagaacagtataa 17540632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 33366484 - 33366520
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    |||||||| |||||||||||||||||||| |||||||    
T  33366484 tgtgtttggtttgcaaaacagcaagtactggacagaa 33366520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 43640976 - 43641017
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  43640976 tgtgtttggtttgcaaaacagcaagtactagacagaacagta 43641017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 49152308 - 49152264
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||    
T  49152308 tgtgtttggtttgcaaaacagcaagtactggacagaacagtataa 49152264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 12600763 - 12600804
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  12600763 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 12600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 23521757 - 23521798
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  23521757 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 23521798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 24002215 - 24002256
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  24002215 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 24002256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 33553036 - 33552995
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  33553036 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 33552995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 36885823 - 36885864
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| ||||||||||||| |||||||||||||| ||||    
T  36885823 tgtgtttggtttgcaaaacagcgagtactagacagaacagta 36885864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 42869859 - 42869900
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  42869859 tgtgtttggtttgcaaaacagcaagtactcgacagaacagta 42869900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 2725326 - 2725290
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    |||||||| |||||||||||||||||||| |||||||    
T  2725326 tgtgtttggtttgcaaaacagcaagtactggacagaa 2725290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 21579903 - 21579947
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||| ||||||| ||||||| |||||||    
T  21579903 tgtgtttggtttgcaaaacagtaagtactggacagaacagtataa 21579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 28115157 - 28115193
Alignment:
Q  299 gtttgatttgcaaaacagcaagtactagacagaatag 335  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  28115157 gtttggtttgcaaaacagtaagtactagacagaatag 28115193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 56154498 - 56154542
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||||    
T  56154498 tgtgtttggtttgcaaaacaacaagtactggacagaacagtataa 56154542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 44738332 - 44738291
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  44738332 tgtgtttggtttgcaaaacagcaagtactagacagaacagta 44738291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 39281778 - 39281822
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||    
T  39281778 tgtgtttggtttgcaaaacagtaagtactggacagaatagtataa 39281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 845015 - 844974
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  845015 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 844974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 26118491 - 26118450
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  26118491 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 26118450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 26765080 - 26765039
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  26765080 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 26765039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 30105956 - 30105915
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  30105956 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 30105915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 41972795 - 41972836
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  41972795 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 41972836  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 42510408 - 42510449
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  42510408 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 42510449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 50540227 - 50540271
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||| ||||||| ||||||| |||||||    
T  50540227 tgtgtttggtttgcaaaacagtaagtacttgacagaacagtataa 50540271  T

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Target: scaffold0280 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 13905 - 13863
Alignment:
Q  299 gtttgatttgcaaaacagcaagtactagacagaatagtataat 341  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||    
T  13905 gtttgatttgcaaaacagtaagtactggacagaacagtataat 13863  T

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Target: scaffold0208 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 2560 - 2519
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2560 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2519  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 51313 - 51354
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  51313 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 51354  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 4052371 - 4052412
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4052371 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 4052412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 14005260 - 14005219
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  14005260 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 14005219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 27103833 - 27103874
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  27103833 tgtgtttgatttgcaaaacaacaagtactggacagaacagta 27103874  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 32020232 - 32020191
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32020232 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32020191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 32303816 - 32303775
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32303816 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32303775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 35225537 - 35225578
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||| ||||||| ||||||||||||    
T  35225537 tgtgtttggtttgcaaaacagtaagtactggacagaatagta 35225578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 37861770 - 37861811
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  37861770 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 37861811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 31731938 - 31731982
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||| ||||||| ||||||| |||||||    
T  31731938 tgtgtttggtttgcaaaacagtaagtactggacagaaaagtataa 31731982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 3922920 - 3922879
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  3922920 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 3922879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 32873986 - 32873945
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  32873986 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 32873945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 18470563 - 18470603
Alignment:
Q  297 gtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  18470563 gtgtttggtttgcaaaacagcaagtactggacagaacagta 18470603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 15277192 - 15277151
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  15277192 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 15277151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 4494352 - 4494312
Alignment:
Q  297 gtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||| |||||||||||| ||||||||||||||| ||||    
T  4494352 gtgtttggtttgcaaaacagtaagtactagacagaacagta 4494312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 32410103 - 32410063
Alignment:
Q  300 tttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    ||||||||||||||||| || |||||||||||| |||||||    
T  32410103 tttgatttgcaaaacagtaaatactagacagaacagtataa 32410063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 2351554 - 2351595
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  2351554 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 2351595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 4818362 - 4818321
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  4818362 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 4818321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 7726030 - 7725997
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagaca 329  Q
    ||||||||||||||||||||| ||||||||||||    
T  7726030 tgtgtttgatttgcaaaacagtaagtactagaca 7725997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 31880283 - 31880242
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  31880283 tgtgtttgatttgcaaaacagtaagtactggacagaacagta 31880242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 35701151 - 35701192
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    |||||||| |||||||||||||||||||| ||||||| ||||    
T  35701151 tgtgtttggtttgcaaaacagcaagtactggacagaacagta 35701192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 6284521 - 6284485
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaa 332  Q
    |||||||||||| |||||||||||||||| |||||||    
T  6284521 tgtgtttgatttacaaaacagcaagtactggacagaa 6284485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 11963216 - 11963256
Alignment:
Q  297 gtgtttgatttgcaaaacagcaagtactagacagaatagta 337  Q
    ||||||| |||||||||||||||||||| ||||||| ||||    
T  11963216 gtgtttggtttgcaaaacagcaagtactggacagaacagta 11963256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 101823 - 101867
Alignment:
Q  296 tgtgtttgatttgcaaaacagcaagtactagacagaatagtataa 340  Q
    |||||||| |||||||||||||||||||  ||||||| |||||||    
T  101823 tgtgtttggtttgcaaaacagcaagtaccggacagaacagtataa 101867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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