View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_low_13 (Length: 240)
Name: NF5008_low_13
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_13 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 13967063 - 13966840
Alignment:
| Q |
17 |
cagccttaacatagatcacaaaaggtgctgcatttgtaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccac |
116 |
Q |
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| T |
13967063 |
cagccttaacatagatcacaaaaggtgctgcatttgtaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccac |
13966964 |
T |
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| Q |
117 |
aacagcattagttttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatcatcagataaaagcctcctactaaca |
216 |
Q |
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| T |
13966963 |
aacagcattagctttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatcatcagataaaagcctcctactaaca |
13966864 |
T |
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| Q |
217 |
ctatattgggatggatggaaaccc |
240 |
Q |
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| T |
13966863 |
ccatattgggatggattgaaaccc |
13966840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 13977231 - 13977008
Alignment:
| Q |
17 |
cagccttaacatagatcacaaaaggtgctgcatttgtaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccac |
116 |
Q |
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|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977231 |
cagccttaacatggatcacaaaaggtactgcattttgaggaggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccac |
13977132 |
T |
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| Q |
117 |
aacagcattagttttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatcatcagataaaagcctcctactaaca |
216 |
Q |
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| T |
13977131 |
aacagcatcagctttaacatttccaccagcaagaagatgtctatgcccgtcactaacccatgaaggaataccatcatcagataaaagcctcctactaaca |
13977032 |
T |
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| Q |
217 |
ctatattgggatggatggaaaccc |
240 |
Q |
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| T |
13977031 |
ccatattgggatggatcgaaaccc |
13977008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 13959452 - 13959326
Alignment:
| Q |
57 |
aggaacagtcttaagagcatcagttaatgtcttaaactgtccactcccatcttgagccacaacagcattagttttaacatttccaccagcaagaagatgt |
156 |
Q |
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| T |
13959452 |
aggaacagtcttaatagcatcagttaatgtcttaaactgtccacttccatcttgagccacaacaacattaggtttaacagttgcttcagcaagaagtcgt |
13959353 |
T |
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| Q |
157 |
ctatgcccgtcactaacccatgaagga |
183 |
Q |
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| T |
13959352 |
ctttgcccttcgctaacccataaagga |
13959326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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