View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5008_low_14 (Length: 239)
Name: NF5008_low_14
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_14 |
 | |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 47985272 - 47985052
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47985272 |
gacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
47985173 |
T |
|
| Q |
119 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47985172 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
47985073 |
T |
|
| Q |
219 |
ttccacgtcatatctagtttt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47985072 |
ttccacgtcatatctagtttt |
47985052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 47994559 - 47994339
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47994559 |
gacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
47994460 |
T |
|
| Q |
119 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47994459 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
47994360 |
T |
|
| Q |
219 |
ttccacgtcatatctagtttt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47994359 |
ttccacgtcatatctagtttt |
47994339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 48003846 - 48003626
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48003846 |
gacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
48003747 |
T |
|
| Q |
119 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48003746 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
48003647 |
T |
|
| Q |
219 |
ttccacgtcatatctagtttt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48003646 |
ttccacgtcatatctagtttt |
48003626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 48013131 - 48012911
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48013131 |
gacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatgaggggtaaaaatcagtttttgtagtgcatgcaaacttttgattggaaacaa |
48013032 |
T |
|
| Q |
119 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48013031 |
ttgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattc |
48012932 |
T |
|
| Q |
219 |
ttccacgtcatatctagtttt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
48012931 |
ttccacgtcatatctagtttt |
48012911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 23127229 - 23127114
Alignment:
| Q |
108 |
attggaaacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgtta |
207 |
Q |
| |
|
||||| ||||||| || | || |||||| ||||||||||||||||||| |||||||||||||||||||||||| | || ||||| || | |||||||| |
|
|
| T |
23127229 |
attggcaacaattattctgcatttttggatgaagtttctagattttatgcatggtaaatttttgtaatcctaatgtcagttgaaatatcataatttgttc |
23127130 |
T |
|
| Q |
208 |
tgttacaattcttcca |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23127129 |
tgttacaattcttcca |
23127114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 5334555 - 5334635
Alignment:
| Q |
116 |
caattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagatt |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| || ||||| ||||||||||| |
|
|
| T |
5334555 |
caattgttttccatttttggctgaagtttctagattttatccatggtgaatttttgtattcacaaagagtggtgaaagatt |
5334635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 5255930 - 5255865
Alignment:
| Q |
114 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
179 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||| |||||||||| |
|
|
| T |
5255930 |
aacaattgttttccatttttggctgaagtttctagattttatccatgctaagtttatgtaatccta |
5255865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 5351832 - 5351946
Alignment:
| Q |
114 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttac |
213 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| |||||||| |||| | ||||||| || || ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
5351832 |
aacaattgttttccatttttggctgtagtttcttgattttatccatgttgaattttt-tattcacaaagagtggtgaaagattctaatttgttctgttac |
5351930 |
T |
|
| Q |
214 |
aattcttccacgtcat |
229 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
5351931 |
aattgttccatgtcat |
5351946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 5180598 - 5180533
Alignment:
| Q |
114 |
aacaattgttttccaattttggctgaagtttctagattttattcatggtaaatttttgtaatccta |
179 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| |||| ||| |||||||||||||| |
|
|
| T |
5180598 |
aacaattgttttccattttcggctgaagtttttagattttatccatgctaagtttttgtaatccta |
5180533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 5687573 - 5687614
Alignment:
| Q |
114 |
aacaattgttttccaattttggctgaagtttctagattttat |
155 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5687573 |
aacaattgttttccaattttggctgcagtttctagattttat |
5687614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 5100612 - 5100521
Alignment:
| Q |
140 |
agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat |
231 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| || ||||| ||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
5100612 |
agtttctagattttatccttggtgaatttttgtattcacaaagagttctgaaagattctaatttgttctgttacaattcttccatgtcatat |
5100521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 5135713 - 5135630
Alignment:
| Q |
140 |
agtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttcca |
223 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| || ||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
5135713 |
agtttctagattttattcttggtgaatttttgtattcaaaaagagttctgaaagattctaatttgttctgttacaattcttcca |
5135630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 5398509 - 5398604
Alignment:
| Q |
129 |
attttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtca |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||| || || ||| ||||||||||| |||||||| |||||||||||||||| |||| |
|
|
| T |
5398509 |
attttggcttaagtttctagattttatccatggtgaattttt-tattc----agagtggtgaaagattctaatttgttctgttacaattcttccatgtca |
5398603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 5098646 - 5098720
Alignment:
| Q |
157 |
catggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatat |
231 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||||| ||| || ||||| |||||||||||||||| ||||||| |
|
|
| T |
5098646 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtaagttgttctgttacaattcttccatgtcatat |
5098720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5100772 - 5100723
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatga |
68 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5100772 |
gacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga |
5100723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 5180686 - 5180637
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatga |
68 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5180686 |
gacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatga |
5180637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5135873 - 5135825
Alignment:
| Q |
19 |
gacttcaatcaaactagaaagaagaaaaaacgagtggaatgaatcaatg |
67 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5135873 |
gacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatg |
5135825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 5242276 - 5242214
Alignment:
| Q |
108 |
attggaaacaattgttttccaattttggctgaagtttctagattttattcatggtaaattttt |
170 |
Q |
| |
|
||||| ||||||||||||||| ||| ||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
5242276 |
attggcaacaattgttttccatctttttctgtagtttctagattttatccatggtgaattttt |
5242214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 5256011 - 5255977
Alignment:
| Q |
34 |
agaaagaagaaaaaacgagtggaatgaatcaatga |
68 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
5256011 |
agaaagaagaaaaaccgagtggaatgaatcaatga |
5255977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 5283136 - 5283102
Alignment:
| Q |
34 |
agaaagaagaaaaaacgagtggaatgaatcaatga |
68 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
5283136 |
agaaagaagaaaaaccgagtggaatgaatcaatga |
5283102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 5439519 - 5439587
Alignment:
| Q |
129 |
attttggctgaagtttctagattttattcatggtaaatttttgtaatcctaaagataggtgaaagatta |
197 |
Q |
| |
|
||||||| |||||||| | ||||||| ||| |||| |||||||||||||||||| || | |||||||| |
|
|
| T |
5439519 |
attttggttgaagtttttttattttatccattgtaattttttgtaatcctaaagagagataaaagatta |
5439587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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