View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_low_3 (Length: 522)
Name: NF5008_low_3
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 6825419 - 6824918
Alignment:
| Q |
1 |
atcaaaaccacaagagtatctcattactaaattaattcaagcaatcaataaataaatacatagaaatacgaaatcgatgaagaaaggatgcttacgatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6825419 |
atcaaaaccacaagagtatctcattactaaattaattcaagcaatcaataaataaatacatacaaatacgaaatcgatgaagaaaggatgcttacgatat |
6825320 |
T |
|
| Q |
101 |
tagaatcttgaagaggacgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatgaattcattatt |
200 |
Q |
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| T |
6825319 |
tagaatcttgaagaggacgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatgaattcattatt |
6825220 |
T |
|
| Q |
201 |
agaagtagcagaaagatgcgaacatttatcgttagaaatttgtgctttcatcaaagcacgaagattctgccaccgatttgaaccactgcttccaattcca |
300 |
Q |
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| T |
6825219 |
agaagtagcagaaagatgcgaacatttatcgttagaaatttgtgctttcatcaaagcacgaagattctgccaccgatttgaaccactgcttccaattcca |
6825120 |
T |
|
| Q |
301 |
gtccacatatcttcaggaattggaacttctaaaaccgtttctaatccatcaactttatcgaaatttggacacagtttcctcattgaatttgaggaactaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6825119 |
gtccacatatcttcaggaattggaacttctaaaaccgtttctaatccatcaactttatcgaaatttggacacagtttcctcattgaatttgaggaactaa |
6825020 |
T |
|
| Q |
401 |
ttttccaattatcttctct-agtttttatatatcctagctaggtgaatgaaatttgatgaatgaatgtgaaatgattatgatttttctggttttggttga |
499 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6825019 |
ttttccaattatcttctctaattttttatatatcctagctaggtgaatgaaatttgatgaatgaaagtgaaatgattatgatttttctggttttggttga |
6824920 |
T |
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| Q |
500 |
tt |
501 |
Q |
| |
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|| |
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| T |
6824919 |
tt |
6824918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 52296099 - 52296012
Alignment:
| Q |
118 |
cgagtcaaagtatgatcacattgaacctgaagaggaatcaagggagaaccaacaagtttaagcaaagcaatgaattcattattagaag |
205 |
Q |
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|||||||||||||||||| ||||||||||||||||||| | |||| ||| ||||| |||||||| || ||||||||||||| |||| |
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| T |
52296099 |
cgagtcaaagtatgatcagattgaacctgaagaggaataagaggagcacccacaagcttaagcaatgcggtgaattcattatttgaag |
52296012 |
T |
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