View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_low_5 (Length: 489)
Name: NF5008_low_5
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 250 - 475
Target Start/End: Original strand, 3532498 - 3532723
Alignment:
| Q |
250 |
tttttaagatgggtattaaacacatatgaatgtagtttttgtagatatatttgttatctcctttttagtctgccattaaagatgtcttaatctatcctct |
349 |
Q |
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| T |
3532498 |
tttttaagatgggtattaaacacatatgatagtagtttttgtagatatatttgttatctcctttttagtctgccattaaagatgtcttaatctatcctct |
3532597 |
T |
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| Q |
350 |
ttggatcttttcgcgaatagtgtgacaatctagtttaatttgcttatctgctcaagctaaagtgggtttgcagaaatgtgtaattgattgtcacaaaaca |
449 |
Q |
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| T |
3532598 |
ttggatcttttcgcgaatagtgtgacaatctagtttaatttgcttatctgctcaagctaaagtgggtttgcagcaatgtgtaattgattgtcacaaaaca |
3532697 |
T |
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| Q |
450 |
atcttgccagcccgagatgtggtact |
475 |
Q |
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| T |
3532698 |
atcttgccagcccgggatgtggtact |
3532723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3532186 - 3532424
Alignment:
| Q |
1 |
tgaaataatgtgattgatgcaggagctatttttggggagattctctacnnnnnnnncgtaaaaattatattcttactttgtctttatttgatccatatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
3532186 |
tgaaataatgtgattgatgcaggagctatttttggggagattctctacttttttttcatcaaaattatattcttactttgtctttatttgatccatatct |
3532285 |
T |
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| Q |
101 |
gtcaaatcttaattactcttcaaagagagtctttttgagttgctttagagagtttaagggatgcaattgtgacaatatataccactatcctttaattgtt |
200 |
Q |
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| T |
3532286 |
gtcaaatcttaattactcttcaa--agagtctttttgagttgctttagagagtttaagggatgcaattgtgaca----ataccactatcctataattgtt |
3532379 |
T |
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| Q |
201 |
ccataataatttcaaaattacgttgacaatcaaaatgaatgaata |
245 |
Q |
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| T |
3532380 |
ccataataatttcaaaattacgttgacaatcaaaatgaatgaata |
3532424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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