View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5008_low_7 (Length: 439)
Name: NF5008_low_7
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 32 - 306
Target Start/End: Original strand, 15449140 - 15449413
Alignment:
| Q |
32 |
gttatatatagttaaataaatgtatcttttggaaggaagatattctcttttgaattaagagtttcactaagatagatatgcatgccgatttgaatgataa |
131 |
Q |
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| T |
15449140 |
gttatgtatagttaaataaatgtatcttttggaaggaagatattctcttttgaattaagagtttcattaagatagatatgcatgccgatttgaatgataa |
15449239 |
T |
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| Q |
132 |
acatatttaatgaataaatctatcttttattcttatcacactcctactttaactcttcacatagatgtgnnnnnnnaattgaattggggcatgagtaaca |
231 |
Q |
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| T |
15449240 |
acatatttaatgaataaatctatcttttattcttatcatactcctactttaactcttcacatagatgt-tttttttaattgaattggggcatgagtaaca |
15449338 |
T |
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| Q |
232 |
ttaattttcaacaaaacataataactaatgtaaaatctagtcgaacatagtatcataatataacatacattttca |
306 |
Q |
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| T |
15449339 |
ttaattttcaacaaaatataatatctaatgtaaaaactagtcgaacataatatgataacataacatacattttca |
15449413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 15449412 - 15449496
Alignment:
| Q |
341 |
cacaacttaataatcaagtagctcaactcattagaagaatgcaatgtcaaatataatggtgttgactttggtttttggtggttag |
425 |
Q |
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| T |
15449412 |
cacaacttaataatcaagtagctcaactcattagaagaatgcaatgtcaaatataatggtgttgactttggtttttggtggttag |
15449496 |
T |
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