View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5008_low_9 (Length: 375)
Name: NF5008_low_9
Description: NF5008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5008_low_9 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 13966710 - 13966336
Alignment:
| Q |
1 |
tgttgatgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13966710 |
tgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttat |
13966611 |
T |
|
| Q |
101 |
gaattccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13966610 |
gaattccatcaacagcataatccaaaacttcattgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtt |
13966511 |
T |
|
| Q |
201 |
tatgtgtttccgtaattcctctgctgttgcacccaaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13966510 |
tatgtgtttccgtaattcctcttctgttgcacccaaagctcctttgatacgatttttcatgttgctgaatgacgctttttcaagagttttgtgacatgtt |
13966411 |
T |
|
| Q |
301 |
tctttgaattttattgattgacatagcatatcaacannnnnnngcgagttagagatatgtgctttttgttctcca |
375 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13966410 |
tctttgaattttgttgattgacatagcatatcaacatttttttgcgagttagagatatgtgctttttgttctcca |
13966336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13976878 - 13976543
Alignment:
| Q |
1 |
tgttgatgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13976878 |
tgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttat |
13976779 |
T |
|
| Q |
101 |
gaattccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
13976778 |
gaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttgataaagtgctgaattgtt |
13976679 |
T |
|
| Q |
201 |
tatgtgtttccgtaattcctctgctgttgcacccaaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| | | |||| ||| ||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
13976678 |
tatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctctttcgtgtcggttgatgacgcgttttcaagacttttgtgacatgtt |
13976579 |
T |
|
| Q |
301 |
tctttgaattttattgattgacatagcatatcaaca |
336 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
13976578 |
tctttgtattctgttgattgacatagcatatcaaca |
13976543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 13959160 - 13958912
Alignment:
| Q |
1 |
tgttgatgagaaagtgtaccagttaaccaaactttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||| ||| ||||||| || |||| | |||||||| |||| || ||||||||||||| |
|
|
| T |
13959160 |
tgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttatccactgcaccaacagatttat |
13959061 |
T |
|
| Q |
101 |
gaattccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtt |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | ||||||||| ||| | |||| |||| |
|
|
| T |
13959060 |
gaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataagagatgaactgtt |
13958961 |
T |
|
| Q |
201 |
tatgtgtttccgtaattcctctgctgttgcacccaaagctcctttgata |
249 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||| |||||| |||||||| |
|
|
| T |
13958960 |
tatgtgtttcaataactcctctgatgttgcactgaaagctgctttgata |
13958912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University