View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_high_5 (Length: 438)
Name: NF5009_high_5
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 430
Target Start/End: Complemental strand, 31828809 - 31828379
Alignment:
| Q |
2 |
tctgtcactttcaggccacctccgaaatgcacgagaccatgcaagaagcatagccacatctgcgagaataaccgaactccatacttttctaaattaagca |
101 |
Q |
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| T |
31828809 |
tctgtcactttcaggccacctccgaaatgcaccagaccatgcaagaagcatagccacatctgcgagaataaccgaactccatacttttctaaattaagca |
31828710 |
T |
|
| Q |
102 |
gcaaaactggctcctttaccacccttcttaacctcacagcttatatcaaacccgctcctgcgcccgccctatgaaatcgcaacgatcacatactgctact |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828709 |
gcaaaactggctcctttaccacccttcttaacctcacagcttatatcaaacccgctcctgcgcccgccctatgaaatcgcaacgatcacatactgctact |
31828610 |
T |
|
| Q |
202 |
cccgtttctaagtcaagacacagatagaactgcagctgcatattctg--cagtctattcactagcggagctgctcctgcaaatgtcctgctaccagccac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31828609 |
cccgtttctaagtcaagacacagatagaactgcagctgcatattctgcacagtctattcactagcggagctgctcctgcaaaagtcctgctacctgccac |
31828510 |
T |
|
| Q |
300 |
acaatggcgaacacgaatggacaaaacacgattagaccgtgaacaaaacctctgacacttgatccaccttgcaaaccaagaactcagtaagcaaacactt |
399 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31828509 |
acaatggcgaatacgaatggacaaaacacgattagaccatgaacaaaacctctgacacttgatccaccttgcaaaccaagaactcagtaagcaaacactt |
31828410 |
T |
|
| Q |
400 |
cccagttgtacctcagagacacccctatgct |
430 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31828409 |
cccagttgtacctcagagacacccctatgct |
31828379 |
T |
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