View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_low_10 (Length: 321)
Name: NF5009_low_10
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 2567694 - 2567522
Alignment:
| Q |
1 |
acacgtgttagggcaatggttttacttaacgtcgaccaatttcctcattcaaattggtcaccatatattttgaaaactcattgtgctcacataatttact |
100 |
Q |
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| T |
2567694 |
acacgtgttcgggcaatggtttttcttaacgtcgaccaatttccacattcaaattggtcaccatatattttgaaaactcattgtgctcacataatttact |
2567595 |
T |
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| Q |
101 |
tcttcttcattaaattaatttatggtcgaaatttgtcaactaccgtatatgtggttggttagattttaacttc |
173 |
Q |
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| T |
2567594 |
tcttcttcattaaattaatttatggtcgaaatttgtcaactaccgtatatgtggttggttagattttaacttc |
2567522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 2567446 - 2567398
Alignment:
| Q |
249 |
cctactctttatttatttgttattttgaagttataaaaattacatttta |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2567446 |
cctactctttatttatttgttattttgaagttataaaaattacatttta |
2567398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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