View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_low_13 (Length: 258)
Name: NF5009_low_13
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 36301720 - 36301491
Alignment:
| Q |
19 |
agtagatctaagtgaaatttatacaaaaactgtattagagaatactctttgaatatcaaagatgatctaagtctatatgcatgatttcatgatcaaagta |
118 |
Q |
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| T |
36301720 |
agtagatctaagtgaaatttatacaaaaattgtattagagaatactctttgaatattaaagatgatctaagtctatatgcatgatttcatgatcaaagta |
36301621 |
T |
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| Q |
119 |
aaaatgccctcaaaattgcccttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatcttt |
218 |
Q |
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| T |
36301620 |
aaagtgccctcaaaattgcccttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatcttt |
36301521 |
T |
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| Q |
219 |
ggagttcagagggcacaatcttatcttcat |
248 |
Q |
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| T |
36301520 |
ggagttcagagggcacaatcttatcttcat |
36301491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 36297367 - 36297256
Alignment:
| Q |
137 |
cccttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatctttggagttcagagggcacaa |
236 |
Q |
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| T |
36297367 |
cccttgtagtatataatcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaatctttggagttcagagggcacaa |
36297268 |
T |
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| Q |
237 |
tcttatcttcat |
248 |
Q |
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| T |
36297267 |
ctttatcttcat |
36297256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 217
Target Start/End: Complemental strand, 36300010 - 36299932
Alignment:
| Q |
139 |
cttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatctt |
217 |
Q |
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| T |
36300010 |
cttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaatctt |
36299932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 248
Target Start/End: Original strand, 48299000 - 48299219
Alignment:
| Q |
40 |
tacaaaaactgtattagagaatactctttgaatatcaaagatgatctaagtctatatgcatgatttcatgatcaaagtaaaaatgccctcaaaattgcc- |
138 |
Q |
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| T |
48299000 |
tacaaaaactgtattagagaatactctttgaataacaaaggtgatctaggtctatatgcatggttttatggctcaagtaaaagtgccctcaatattgcct |
48299099 |
T |
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| Q |
139 |
----------cttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaatctttggagttcaga |
228 |
Q |
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| T |
48299100 |
cacacatgcccttatagcataaaatcagatggccactatttggaacttcatgatattgtatccaaggtagctgccatgaaacaaatctttgaagttcaaa |
48299199 |
T |
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| Q |
229 |
gggcacaatcttatcttcat |
248 |
Q |
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|||||||| ||||||||||| |
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| T |
48299200 |
gggcacaaccttatcttcat |
48299219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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