View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_low_16 (Length: 241)
Name: NF5009_low_16
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 53958381 - 53958603
Alignment:
| Q |
19 |
gattcaccgtaggaagagccatggggctactaggctcgaattgtttcatagggttatcaagtagaacaagtgatccatgttgtggctcaggcttcagagc |
118 |
Q |
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| T |
53958381 |
gattcaccgtaggaagagccatggggctactaggctcgaattgtttcatagggttatcaagtagaacaagtgatccatgttgtggctcaggcttcagagc |
53958480 |
T |
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| Q |
119 |
ctgtacagcaaagttacaccaagcaagtgaaaggaaatccattgactcagggtgtgcatctgaaggggatagattaaattctgaagccatgttaatgtga |
218 |
Q |
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| T |
53958481 |
ctgtacagcaaagttacaccaagcaagtgaaaggaaatccattgagtcagggtgtgcatctgaaggggatagattaaattctgaagccatgttaatgtga |
53958580 |
T |
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| Q |
219 |
tgatatcccaaaaacacaagatt |
241 |
Q |
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| T |
53958581 |
tgatatcccaaaaacacaagatt |
53958603 |
T |
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