View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5009_low_17 (Length: 224)

Name: NF5009_low_17
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5009_low_17
NF5009_low_17
[»] chr3 (17 HSPs)
chr3 (107-215)||(54540171-54540279)
chr3 (1-101)||(21853276-21853376)
chr3 (1-101)||(13856178-13856278)
chr3 (1-100)||(44994918-44995017)
chr3 (1-100)||(8950454-8950553)
chr3 (1-101)||(5391536-5391636)
chr3 (1-101)||(40845866-40845966)
chr3 (1-71)||(32352926-32352996)
chr3 (1-98)||(20382598-20382693)
chr3 (1-101)||(36539711-36539811)
chr3 (1-60)||(3178782-3178841)
chr3 (1-98)||(1781841-1781938)
chr3 (1-102)||(43347284-43347385)
chr3 (1-37)||(23467507-23467543)
chr3 (1-100)||(27642739-27642838)
chr3 (1-37)||(19649385-19649421)
chr3 (73-101)||(23467465-23467493)
[»] chr2 (10 HSPs)
chr2 (1-101)||(42769707-42769807)
chr2 (1-101)||(14186387-14186487)
chr2 (1-101)||(29846521-29846621)
chr2 (1-101)||(14941993-14942093)
chr2 (11-101)||(3597839-3597929)
chr2 (1-101)||(19181627-19181727)
chr2 (1-101)||(40277237-40277337)
chr2 (1-98)||(3956651-3956748)
chr2 (1-43)||(6318465-6318507)
chr2 (22-98)||(1386114-1386190)
[»] chr1 (13 HSPs)
chr1 (1-101)||(42517243-42517343)
chr1 (1-101)||(47022781-47022881)
chr1 (1-102)||(5975067-5975168)
chr1 (1-101)||(10155965-10156065)
chr1 (1-102)||(49902547-49902648)
chr1 (1-101)||(48392355-48392455)
chr1 (1-104)||(7742725-7742828)
chr1 (1-98)||(38859930-38860027)
chr1 (1-101)||(23908364-23908454)
chr1 (1-101)||(3346865-3346965)
chr1 (1-101)||(29149507-29149597)
chr1 (1-75)||(37189719-37189792)
chr1 (1-63)||(10907635-10907697)
[»] chr5 (13 HSPs)
chr5 (4-101)||(6257359-6257456)
chr5 (1-101)||(16618519-16618619)
chr5 (1-97)||(38397677-38397773)
chr5 (1-101)||(23218564-23218664)
chr5 (1-101)||(37168982-37169082)
chr5 (1-100)||(15631693-15631792)
chr5 (1-101)||(39862436-39862536)
chr5 (1-98)||(8456915-8457012)
chr5 (1-98)||(10081224-10081323)
chr5 (1-95)||(29491369-29491463)
chr5 (1-89)||(36769035-36769123)
chr5 (1-94)||(25560284-25560376)
chr5 (1-50)||(29790219-29790268)
[»] chr7 (14 HSPs)
chr7 (1-101)||(34707195-34707295)
chr7 (1-103)||(44164690-44164792)
chr7 (1-101)||(10576752-10576852)
chr7 (1-101)||(34259597-34259697)
chr7 (1-100)||(29238093-29238192)
chr7 (1-101)||(29981062-29981162)
chr7 (1-101)||(29555888-29555988)
chr7 (1-63)||(24320426-24320488)
chr7 (1-98)||(19334512-19334609)
chr7 (1-57)||(32876523-32876579)
chr7 (1-63)||(33057644-33057706)
chr7 (1-63)||(17303101-17303163)
chr7 (1-66)||(10334257-10334322)
chr7 (16-73)||(41853205-41853262)
[»] chr6 (8 HSPs)
chr6 (1-101)||(13627619-13627719)
chr6 (1-102)||(24694599-24694700)
chr6 (1-101)||(9231803-9231903)
chr6 (1-97)||(14309752-14309847)
chr6 (1-102)||(11084669-11084769)
chr6 (1-70)||(1727913-1727982)
chr6 (1-97)||(24497527-24497623)
chr6 (1-103)||(28750597-28750699)
[»] chr4 (18 HSPs)
chr4 (1-101)||(1535850-1535950)
chr4 (1-101)||(35019015-35019114)
chr4 (1-101)||(49284436-49284536)
chr4 (1-98)||(31377469-31377565)
chr4 (1-101)||(36851336-36851436)
chr4 (1-98)||(17888502-17888599)
chr4 (135-215)||(26342886-26342966)
chr4 (1-101)||(36012135-36012234)
chr4 (1-101)||(16338162-16338262)
chr4 (1-98)||(11054535-11054631)
chr4 (1-101)||(37801213-37801313)
chr4 (1-98)||(20818646-20818743)
chr4 (1-63)||(25954829-25954891)
chr4 (1-63)||(34241072-34241134)
chr4 (1-101)||(52632597-52632687)
chr4 (1-93)||(46583508-46583590)
chr4 (1-97)||(19124691-19124787)
chr4 (73-101)||(34241132-34241160)
[»] chr8 (11 HSPs)
chr8 (1-101)||(22324675-22324775)
chr8 (1-101)||(35806873-35806973)
chr8 (1-101)||(42072507-42072607)
chr8 (1-98)||(21525437-21525534)
chr8 (1-101)||(33934318-33934418)
chr8 (1-101)||(42013951-42014051)
chr8 (1-101)||(26021475-26021576)
chr8 (1-86)||(16523185-16523270)
chr8 (4-87)||(21488148-21488231)
chr8 (1-59)||(24065352-24065410)
chr8 (1-102)||(10112126-10112227)
[»] scaffold0079 (1 HSPs)
scaffold0079 (1-101)||(54598-54698)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 54540279 - 54540171
Alignment:
Q  107 tacaggaacattaatttcatgtcagagtgtggagatagacatggagatcagagattggcgcggagtcgacggagattgaggagggagattccaacggggt 206  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  54540279 tacaggaacattaatttcatttcagagtgtggaggtagacatggagatcagagattggcgtggagtcgacggagatggaggagggagattccagcggggt 54540180  T
Q  207 gatgatgtc 215  Q
    |||| ||||    
T  54540179 gatggtgtc 54540171  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 21853276 - 21853376
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  21853276 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccct 21853375  T
Q  101 g 101  Q
    |    
T  21853376 g 21853376  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13856178 - 13856278
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  13856178 ttatataagaaattcatagggatttacacaagaaattgaaaaaaatttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgcccct 13856277  T
Q  101 g 101  Q
    |    
T  13856278 g 13856278  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44995017 - 44994918
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||| || ||||||||||||||||||||||||||||    
T  44995017 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgcccct 44994918  T

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Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 8950553 - 8950454
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  8950553 ttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcccct 8950454  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5391536 - 5391636
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||||||||||  |||   ||||| |||||||||||||||||||  ||||||||||||| |||||||||||||    
T  5391536 ttatataagaaattcatagggatttacacaagaaattgtcaaaaaattggcgcggagcccgggcgagtgcccagggtcgccgggccatagaaccgcccct 5391635  T
Q  101 g 101  Q
    |    
T  5391636 g 5391636  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40845966 - 40845866
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  |||| |||||| ||||||||| |||| | ||||||||||||||||||||||||||    
T  40845966 ttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcccct 40845867  T
Q  101 g 101  Q
    |    
T  40845866 g 40845866  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32352926 - 32352996
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcc 71  Q
    |||||||||||||||||||||||||| ||||||||||| ||||   |||||||||||||||||||||||||    
T  32352926 ttatataagaaattcatagggatttatacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcc 32352996  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20382598 - 20382693
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||  ||||  ||||| ||||||||||||| |||||| ||||||||| |||| |||||||||||    
T  20382598 ttatataagaaattcatagggatttacataagaaatt-aaaaaaatttgggccggagcccgggcaagtgcccggggtcgcc-ggccatagaaccgccc 20382693  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36539711 - 36539811
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||| ||||||||||||| ||||||||| | ||  ||| | ||||||||||||||| |||| | | ||||| ||||||||||||||||||    
T  36539711 ttatataagaaatttatagggatttacataagaaattgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcccct 36539810  T
Q  101 g 101  Q
    |    
T  36539811 g 36539811  T

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Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3178782 - 3178841
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagccc 60  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||    
T  3178782 ttatataagaaattcatagggatttacacaagaaattgaaaaaaatttgggccggagccc 3178841  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1781841 - 1781938
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||| ||||||||||| ||||||||| ||||  ||||| || ||||| |||||| |||  ||| ||||||||||||  ||||||||    
T  1781841 ttatataagaaattcagagggatttacataagaaattgcaaaaaatttgggccagagcctgggcgactgcacgggctcgccgggccttgaaaccgccc 1781938  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43347385 - 43347284
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||  |||||  |||||||||| | | ||||   | |||||||| |||||||||||||||    
T  43347385 ttatataagaaattcagaggaatttacataagaaattgcaaaaaatttgggtcggagcccggacaactgcccaagctcgccgggtcttagaaccgcccct 43347286  T
Q  101 gt 102  Q
    ||    
T  43347285 gt 43347284  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 23467543 - 23467507
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaatt 37  Q
    ||||||||||||||||||||||||||||||| |||||    
T  23467543 ttatataagaaattcatagggatttacacaaaaaatt 23467507  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 27642739 - 27642838
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||| | ||||||||| ||||||||| ||||  ||||  | ||||||| ||| | ||||   | ||||||||||||||||| ||||||    
T  27642739 ttatataagaaattcaaaaggatttacataagaaattgcaaaaaatttgagcaggagcccaggcaactgcccaagctcgccgggccttagaactgcccct 27642838  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19649421 - 19649385
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaatt 37  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  19649421 ttatataagaaattcatagcgatttacataagaaatt 19649385  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Complemental strand, 23467493 - 23467465
Alignment:
Q  73 ggggtcgccgggccttagaaccgcccctg 101  Q
    |||||||||||||||||||||||||||||    
T  23467493 ggggtcgccgggccttagaaccgcccctg 23467465  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42769807 - 42769707
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42769807 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 42769708  T
Q  101 g 101  Q
    |    
T  42769707 g 42769707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14186487 - 14186387
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14186487 ttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcccct 14186388  T
Q  101 g 101  Q
    |    
T  14186387 g 14186387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 29846521 - 29846621
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29846521 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgcccct 29846620  T
Q  101 g 101  Q
    |    
T  29846621 g 29846621  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14942093 - 14941993
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||| | |||||||||| |||||||||||||||||    
T  14942093 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgcccct 14941994  T
Q  101 g 101  Q
    |    
T  14941993 g 14941993  T

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Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 3597929 - 3597839
Alignment:
Q  11 aattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccctg 101  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3597929 aatttatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccctg 3597839  T

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Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19181627 - 19181727
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  ||||||||  ||||| |||||||| | ||||||||||||||||||||||||||||    
T  19181627 ttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccatagcccaggcgagtgtccggggtcgccgggccttagaaccgcccct 19181726  T
Q  101 g 101  Q
    |    
T  19181727 g 19181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 40277337 - 40277237
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||| ||||||||||||| || |||||| ||||  ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||    
T  40277337 ttatataagaaatttatagggatttacataaaaaattgcaaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgcccct 40277238  T
Q  101 g 101  Q
    |    
T  40277237 g 40277237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3956651 - 3956748
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||| ||||||||||||||||||| || |||||| ||| ||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||    
T  3956651 ttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtcaccgggccatagaaccgccc 3956748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6318507 - 6318465
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaa 43  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  6318507 ttatataagaaattcatagggatttacataagaaattgaaaaa 6318465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 1386190 - 1386114
Alignment:
Q  22 atttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    ||||||| ||||||||| ||||   ||||  | ||||||||||||||||| ||||||| || ||| |||||||||||    
T  1386190 atttacataagaaattgcaaaaaaattgggtccgagcccgggcgagtgcccggggtcgtcgagccatagaaccgccc 1386114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42517343 - 42517243
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42517343 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 42517244  T
Q  101 g 101  Q
    |    
T  42517243 g 42517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 47022781 - 47022881
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47022781 ttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 47022880  T
Q  101 g 101  Q
    |    
T  47022881 g 47022881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5975067 - 5975168
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  5975067 ttatataagaaattcttagggatttacacaagaaattgaaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgtccct 5975166  T
Q  101 gt 102  Q
    ||    
T  5975167 gt 5975168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 10156065 - 10155965
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||   ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10156065 ttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 10155966  T
Q  101 g 101  Q
    |    
T  10155965 g 10155965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 49902547 - 49902648
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||||||| || |||||||| ||||||||||||||||    
T  49902547 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgcccct 49902646  T
Q  101 gt 102  Q
    ||    
T  49902647 gt 49902648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48392455 - 48392355
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  48392455 ttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggctcggagcccgggcgagtgcccgaggtcgccgggccttagaaccgcccct 48392356  T
Q  101 g 101  Q
    |    
T  48392355 g 48392355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7742828 - 7742725
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||| ||||||||||||||||||| ||||   || || ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7742828 ttatataagaaattcataaggatttacacaagaaattgcaaaaaaatttgctcggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 7742729  T
Q  101 gtct 104  Q
    ||||    
T  7742728 gtct 7742725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38859930 - 38860027
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||  ||||| |||||||||||||||||||| |||||||||||||| |||||||||||    
T  38859930 ttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 38860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 23908364 - 23908454
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| |||||||||| |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23908364 ttatataagaaattcataggaatttacacaaaaaatt----------tggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 23908453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3346865 - 3346965
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  ||||||||| ||| |||||||||||| ||| |||| || |||||||| |||||||    
T  3346865 ttatataagaaattcatagggatttacacaacaaattgcaaaaaatttggcccgaagctcgggcgagtgcccgggatcgctggaccttagaatcgcccct 3346964  T
Q  101 g 101  Q
    |    
T  3346965 g 3346965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29149597 - 29149507
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||| |||||          ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  29149597 ttatataagaaattcatagggatttacacaaaaaatt----------tggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgcccct 29149508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37189719 - 37189792
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggg 75  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||  ||||| |||||| |||||||| ||||||||    
T  37189719 ttatataagaaattcatagagatttacataagaaattgcaaaa-atttgggccggagtccgggcgaatgcctggg 37189792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10907697 - 10907635
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||  ||||| ||||||||||||    
T  10907697 ttatataagaaattcagaggaatttacataagaaattgcaaaaaatttgggccggagcccggg 10907635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 6257456 - 6257359
Alignment:
Q  4 tataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccctg 101  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6257456 tataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccctg 6257359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16618619 - 16618519
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16618619 ttatataagaaattcatagggatttacacaagaaattgtaaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgcccct 16618520  T
Q  101 g 101  Q
    |    
T  16618519 g 16618519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38397677 - 38397773
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38397677 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 38397773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 23218564 - 23218664
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||    
T  23218564 ttatataagaaattcatagggatttacacaagaaattgcaaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcccct 23218663  T
Q  101 g 101  Q
    |    
T  23218664 g 23218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37169082 - 37168982
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  37169082 ttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgcccct 37168983  T
Q  101 g 101  Q
    |    
T  37168982 g 37168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15631693 - 15631792
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||| ||||||||||| ||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  15631693 ttatataagaaattcatagggatttatacaagaaattgtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 15631792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39862536 - 39862436
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||   |||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  39862536 ttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggcccggagctcgggcgagtgcccggggtcgccgggccttagaaccgcccct 39862437  T
Q  101 g 101  Q
    |    
T  39862436 g 39862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8457012 - 8456915
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||| ||||  ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  8457012 ttatataagaaattcatagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgccc 8456915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10081224 - 10081323
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaattt--ttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||| ||||     |||| || ||||||||||||||||||||| |||||||||| |||||||||||    
T  10081224 ttatataagaaattcatagggatttacataagaaattgaaaaaaaaaattgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgccc 10081323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 29491463 - 29491369
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccg 95  Q
    |||||||||||||||||||  ||||||| ||||||||| ||||  ||||| | | ||||||| |||||| | |||||||||||||| | ||||||    
T  29491463 ttatataagaaattcatagaaatttacataagaaattgcaaaagatttgggctgaagcccggacgagtgtccggggtcgccgggccatcgaaccg 29491369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 36769123 - 36769035
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggcctta 89  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||  ||||| |||||| |||| | |||||||||| || |||| |||||    
T  36769123 ttatataagaaattcagaggaatttacataagaaattgcaaaaaatttgggccggagtccggacaagtgcctgggctcaccggacctta 36769035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 25560376 - 25560284
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaacc 94  Q
    |||||||||||||| ||| ||||||||| |||||||| |||||   |||  ||||||||||| |||||| | ||||| |||||||| |||||||    
T  25560376 ttatataagaaatttataaggatttacataagaaatt-gaaaaaaattgagccggagcccggacgagtggccggggttgccgggccatagaacc 25560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29790268 - 29790219
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttgg 50  Q
    |||||||||||||||||| | ||||||| ||||||||| |||| ||||||    
T  29790268 ttatataagaaattcataagaatttacataagaaattgtaaaaattttgg 29790219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34707195 - 34707295
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  34707195 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgcccct 34707294  T
Q  101 g 101  Q
    |    
T  34707295 g 34707295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 44164792 - 44164690
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||  ||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44164792 ttatataagaaattcatagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccct 44164693  T
Q  101 gtc 103  Q
    |||    
T  44164692 gtc 44164690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10576752 - 10576852
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  10576752 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgcccct 10576851  T
Q  101 g 101  Q
    |    
T  10576852 g 10576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34259597 - 34259697
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  34259597 ttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgcccct 34259696  T
Q  101 g 101  Q
    |    
T  34259697 g 34259697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29238192 - 29238093
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  29238192 ttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccct 29238093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29981162 - 29981062
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  29981162 ttatataagaaattcatagggatttacacaagaaattgcaaaagaattggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgcccct 29981063  T
Q  101 g 101  Q
    |    
T  29981062 g 29981062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 29555988 - 29555888
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| |||||||||||||||||  |||   ||||||||||| |||||||||||||  ||||||| ||||| |||||||||||||    
T  29555988 ttatataagaaattcataggaatttacacaagaaattgtcaaaaaattggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgcccct 29555889  T
Q  101 g 101  Q
    |    
T  29555888 g 29555888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24320488 - 24320426
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||  ||||||||||||||||||    
T  24320488 ttatataagaaattcgtaggaatttacacaagaaattgcaaaaaatttggcccggagcccggg 24320426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19334609 - 19334512
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||   |||| ||| | || ||| ||||| | |||||||||||||| |||||||||||    
T  19334609 ttatataagaaattcataggtatttacataagaaattgcaaaaaaattgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgccc 19334512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32876579 - 32876523
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggag 57  Q
    ||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||    
T  32876579 ttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggag 32876523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33057706 - 33057644
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    |||||||||||||||||||||||||||| ||||||||| ||||   |||| ||||||||||||    
T  33057706 ttatataagaaattcatagggatttacataagaaattgaaaaaaaattgggccggagcccggg 33057644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17303163 - 17303101
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||   ||||  |||||||||||    
T  17303163 ttatataagaaattcataggaatttacataagaaattgcaaaaaaattgggtcggagcccggg 17303101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10334257 - 10334322
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcga 66  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||   |||| || ||||||||||||    
T  10334257 ttatataagaaattcagaggaatttacataagaaattgcaaaaaaattgggccagagcccgggcga 10334322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 41853205 - 41853262
Alignment:
Q  16 atagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctg 73  Q
    ||||| ||||| | ||||||||| ||||  ||||| ||||||||||||||||||||||    
T  41853205 ataggaatttaaataagaaattgcaaaaaatttgggccggagcccgggcgagtgcctg 41853262  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13627619 - 13627719
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13627619 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcttggggtcgccgggccttagaaccgcccct 13627718  T
Q  101 g 101  Q
    |    
T  13627719 g 13627719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 24694700 - 24694599
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  24694700 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgcccct 24694601  T
Q  101 gt 102  Q
    ||    
T  24694600 gt 24694599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 9231903 - 9231803
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||| |||||||||||||||||| ||||   ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  9231903 ttatataagaaattcatagagatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgcccct 9231804  T
Q  101 g 101  Q
    |    
T  9231803 g 9231803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14309847 - 14309752
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 97  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||  ||||||||||| ||||||||||||||||||| |||||||    
T  14309847 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggccc-gaaaccgggcgagtgtctggggtcgccgggccttataaccgcc 14309752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 11084669 - 11084769
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||   ||||| |||| ||||||||| |||| |||||| |||||||||||||||||||||    
T  11084669 ttatataagaaattcataggaatttacacaagaaattgcaaaaaaattggctcggaacccgggcga-tgcccggggtcaccgggccttagaaccgcccct 11084767  T
Q  101 gt 102  Q
    ||    
T  11084768 gt 11084769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 1727982 - 1727913
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgc 70  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||    
T  1727982 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcctgggcgagtgc 1727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 24497623 - 24497527
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 97  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||  ||||| |||||||| | || | ||||  || |||||| ||||||||||||||    
T  24497623 ttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggagcctgtgcaactgcccaggctcgccgagccttagaaccgcc 24497527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28750699 - 28750597
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||| | | ||||||| ||||||||| ||||   ||||||| ||||||| || | ||||  |  |||||||||||||||||||||| |    
T  28750699 ttatataagaaattcagaagaatttacataagaaattgcaaaaaaattggcccagagcccgagcaattgcccagactcgccgggccttagaaccgcccat 28750600  T
Q  101 gtc 103  Q
    |||    
T  28750599 gtc 28750597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1535850 - 1535950
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  1535850 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgcccct 1535949  T
Q  101 g 101  Q
    |    
T  1535950 g 1535950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35019015 - 35019114
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  |||||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  35019015 ttatataagaaattcatagg-atttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgcccct 35019113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 49284436 - 49284536
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||||| ||| |||| |||||||||||||| ||||    
T  49284436 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcccgggttcgctgggccttagaaccgtccct 49284535  T
Q  101 g 101  Q
    |    
T  49284536 g 49284536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31377469 - 31377565
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  31377469 ttatataagaaattcatagggatttacataagaaattgaaaaaatttgggcc-ggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 31377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 36851436 - 36851336
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||| |||||||| |||||||| ||||| ||||    
T  36851436 ttatataataaattcatagggatttacacaagaaattgcaaaaaatttggcccggagcccaggcgagtgcccggggtcgctgggccttaaaaccgtccct 36851337  T
Q  101 g 101  Q
    |    
T  36851336 g 36851336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17888599 - 17888502
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||  ||||| |||||||||||||||||||| ||||||||| |||| |||||||||||    
T  17888599 ttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgccc 17888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 26342966 - 26342886
Alignment:
Q  135 gtggagatagacatggagatcagagattggcgcggagtcgacggagattgaggagggagattccaacggggtgatgatgtc 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  26342966 gtggaggtagacatggagatcagagattggcgcggagtcgacggagatggaggagggagattccggcggggtgatggtgtc 26342886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 36012234 - 36012135
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||||||||||||||| |||||| ||||  ||||||||| ||||| | ||||||||  |||||||||||||||||||||||||||    
T  36012234 ttatataagaaattcatagggatttacacaaaaaattgcaaaaaatttggcccgaagccc-gacgagtgcccagggtcgccgggccttagaaccgcccct 36012136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16338262 - 16338162
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||| ||||||||||| |||||||||| |||||| ||||   ||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  16338262 ttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccct 16338163  T
Q  101 g 101  Q
    |    
T  16338162 g 16338162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11054535 - 11054631
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||| ||||   |||| |||||||||||| ||||||  |||||||||||||| |||||||||||    
T  11054535 ttatataagaaattcatagggatttacataagaaattgcaaaa-aattggaccggagcccgggtgagtgctcggggtcgccgggccatagaaccgccc 11054631  T

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Target: chr4; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 37801313 - 37801213
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||| ||||||||||  ||||||||||||||||| ||||  ||| ||||||||||||| ||| |||||| | ||| ||||||||||||||||||||    
T  37801313 ttatataaaaaattcatagaaatttacacaagaaattgcaaaaaatttagcccggagcccggacgaatgcctgagatcgtcgggccttagaaccgcccct 37801214  T
Q  101 g 101  Q
    |    
T  37801213 g 37801213  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20818646 - 20818743
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||| ||||||||| ||||  |||||  | ||||||||||||||||| || ||||||||  | |||||||||||    
T  20818646 ttatataagaaattcatagggatttacaaaagaaattgcaaaaaatttgggtcagagcccgggcgagtgcccggagtcgccggatcatagaaccgccc 20818743  T

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Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25954829 - 25954891
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    |||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||    
T  25954829 ttatataagaaattcataggaatttacacaagaaattgcaaaaaatttggcccggagcccggg 25954891  T

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Target: chr4; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 34241072 - 34241134
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccggg 63  Q
    ||||||||||||||||||||||| |||||||||||||| ||||  ||||||||||||||||||    
T  34241072 ttatataagaaattcatagggatctacacaagaaattgcaaaaaatttggcccggagcccggg 34241134  T

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Target: chr4; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52632597 - 52632687
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||          ||||||||||||||| ||| |||||| |||||| ||||||||||||||| |||||    
T  52632597 ttatataagaaattcatagggatttacacaagaaa----------tttggcccggagcccaggcaagtgcccggggtcaccgggccttagaaccacccct 52632686  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 46583590 - 46583508
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaac 93  Q
    ||||||||||||||||||||||||||||||| ||||| ||          ||||||||||||||||||||| ||||||||||| |||||||||    
T  46583590 ttatataagaaattcatagggatttacacaaaaaatttga----------cccggagcccgggcgagtgcccggggtcgccggaccttagaac 46583508  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 19124787 - 19124691
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcc 97  Q
    |||||||||||||||| ||| ||||||| ||||||||| ||||   || | |||||||||| || | ||||| |  ||||||| |||||||||||||    
T  19124787 ttatataagaaattcagaggaatttacataagaaattgcaaaaaaattaggccggagcccgcgcaactgcctagactcgccggaccttagaaccgcc 19124691  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 34241132 - 34241160
Alignment:
Q  73 ggggtcgccgggccttagaaccgcccctg 101  Q
    |||||||||||||||||||||||||||||    
T  34241132 ggggtcgccgggccttagaaccgcccctg 34241160  T

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Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22324675 - 22324775
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22324675 ttatataagaaattcatagggatttacacaagaaattacaaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccct 22324774  T
Q  101 g 101  Q
    |    
T  22324775 g 22324775  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 35806873 - 35806973
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    ||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  35806873 ttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccct 35806972  T
Q  101 g 101  Q
    |    
T  35806973 g 35806973  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42072507 - 42072607
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  42072507 ttatataagaaattcatagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccct 42072606  T
Q  101 g 101  Q
    |    
T  42072607 g 42072607  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21525437 - 21525534
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 98  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||||| |||||||||| |||||| |||||||||||||||||||    
T  21525437 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttgacccggagccctggcgagtgcccggggtcaccgggccttagaaccgccc 21525534  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33934418 - 33934318
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||  ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  33934418 ttatataagaaattcataggaatttacaaaagaaattgcaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgcccct 33934319  T
Q  101 g 101  Q
    |    
T  33934318 g 33934318  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42013951 - 42014051
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||||||| | ||||| | |||||| ||||||||||||||||||||||||||||    
T  42013951 ttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggcccgaaacccggacaagtgcccggggtcgccgggccttagaaccgcccct 42014050  T
Q  101 g 101  Q
    |    
T  42014051 g 42014051  T

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Target: chr8; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26021475 - 26021576
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgcc-gggccttagaaccgcccc 99  Q
    |||||||||||||||||||||||||||| ||||||||| ||||  |||||| |||||||||||| |||||| |||||| || ||||||||||||||||||    
T  26021475 ttatataagaaattcatagggatttacaaaagaaattgcaaaaaatttggcacggagcccgggctagtgcccggggtcaccggggccttagaaccgcccc 26021574  T
Q  100 tg 101  Q
    ||    
T  26021575 tg 26021576  T

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Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 16523185 - 16523270
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggcc 86  Q
    |||||||||||||||||||||||||||| | ||||||| ||||  ||||| |||||||||| ||||||| | || |||||||||||    
T  16523185 ttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggagcccgagcgagtgtccggcgtcgccgggcc 16523270  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 21488148 - 21488231
Alignment:
Q  4 tataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggcct 87  Q
    ||||||||||||| ||| ||||||||||||||||  ||||  ||| |  | |||||||| |||||||| ||||||||| |||||    
T  21488148 tataagaaattcaaaggaatttacacaagaaattataaaagctttaggacagagcccggacgagtgcccggggtcgccaggcct 21488231  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24065352 - 24065410
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcc 59  Q
    ||||||||||||||||||| |||||| |  |||||||| |||| ||||||||| |||||    
T  24065352 ttatataagaaattcatagagatttatatgagaaattgcaaaagttttggcccagagcc 24065410  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10112126 - 10112227
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||||||||| | ||| ||||||| || |||||| ||||   |||  || |||||||||| | || |  || ||||||||||||||||||||||||    
T  10112126 ttatataagaaattaagaggaatttacataaaaaattgcaaaaaaattgagccagagcccgggcaactgtccaggctcgccgggccttagaaccgcccct 10112225  T
Q  101 gt 102  Q
    ||    
T  10112226 gt 10112227  T

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Target: scaffold0079 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 54598 - 54698
Alignment:
Q  1 ttatataagaaattcatagggatttacacaagaaattggaaaatttttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccct 100  Q
    |||||||| ||||||||||| |||||||||| |||||| ||||   ||||||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  54598 ttatataaaaaattcataggaatttacacaaaaaattgcaaaaaaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccct 54697  T
Q  101 g 101  Q
    |    
T  54698 g 54698  T

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