View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5009_low_3 (Length: 482)

Name: NF5009_low_3
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5009_low_3
NF5009_low_3
[»] chr5 (6 HSPs)
chr5 (13-286)||(33807942-33808213)
chr5 (13-286)||(33811596-33811867)
chr5 (13-286)||(33816514-33816785)
chr5 (108-203)||(16698504-16698601)
chr5 (108-203)||(22763905-22764002)
chr5 (234-286)||(16698618-16698670)
[»] chr6 (4 HSPs)
chr6 (18-286)||(31151926-31152195)
chr6 (89-286)||(22981504-22981710)
chr6 (89-286)||(23806698-23806904)
chr6 (27-210)||(1111378-1111564)
[»] chr3 (9 HSPs)
chr3 (23-286)||(50603138-50603403)
chr3 (36-287)||(54967209-54967477)
chr3 (89-288)||(44782522-44782733)
chr3 (36-203)||(39298736-39298908)
chr3 (89-205)||(18556392-18556511)
chr3 (30-134)||(31725346-31725448)
chr3 (89-274)||(54979854-54980051)
chr3 (108-207)||(17645800-17645897)
chr3 (234-286)||(17645928-17645981)
[»] chr8 (5 HSPs)
chr8 (286-465)||(29240936-29241120)
chr8 (302-465)||(16828482-16828651)
chr8 (36-286)||(41481548-41481815)
chr8 (36-289)||(36167547-36167816)
chr8 (92-281)||(18951129-18951326)
[»] chr1 (2 HSPs)
chr1 (71-286)||(29706854-29707069)
chr1 (111-203)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (36-268)||(26516-26752)
[»] chr7 (11 HSPs)
chr7 (89-286)||(4842648-4842857)
chr7 (36-287)||(25857130-25857395)
chr7 (36-286)||(4835575-4835840)
chr7 (89-205)||(13465046-13465165)
chr7 (26-195)||(8252686-8252853)
chr7 (108-203)||(27341025-27341120)
chr7 (91-212)||(17845847-17845969)
chr7 (89-203)||(24379370-24379487)
chr7 (236-286)||(24380113-24380163)
chr7 (137-203)||(38994151-38994218)
chr7 (216-286)||(24379279-24379347)
[»] scaffold0479 (1 HSPs)
scaffold0479 (89-287)||(2727-2937)
[»] chr4 (3 HSPs)
chr4 (36-286)||(9757212-9757480)
chr4 (108-205)||(37286972-37287069)
chr4 (91-203)||(42682924-42683038)
[»] chr2 (2 HSPs)
chr2 (108-201)||(37037942-37038035)
chr2 (234-268)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-286)||(342217-342404)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 33807942 - 33808213
Alignment:
Q  13 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807942 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33808041  T
Q  113 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33808042 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33808139  T
Q  213 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33808140 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33808213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 33811596 - 33811867
Alignment:
Q  13 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811596 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33811695  T
Q  113 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33811696 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33811793  T
Q  213 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33811794 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 286
Target Start/End: Original strand, 33816514 - 33816785
Alignment:
Q  13 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816514 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33816613  T
Q  113 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 212  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33816614 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33816711  T
Q  213 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33816712 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 33816785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  108 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 203  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  108 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 203  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 16698618 - 16698670
Alignment:
Q  234 agtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||||||| ||||||||||||||| |||||||| |||   |||||||||||    
T  16698618 agtgcctattctgagttcacggaggatggaaattatgcatatatttcccaaca 16698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 31152195 - 31151926
Alignment:
Q  18 agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  31152195 agagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattccc 31152096  T
Q  118 attattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtca 216  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  31152095 attattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtca 31151996  T
Q  217 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  31151995 ttttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  186 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 276  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  22981604 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  277 tttcccaaca 286  Q
    ||||||||||    
T  22981701 tttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 89 - 286
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  186 gttttccacgctaaaattttgttgtgt-------gtcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggca 276  Q
    |||||||||||||||||| |  |||||        | |||||  |||||||||||  ||||||| ||||||||||||||||| ||||||||| |||| ||    
T  23806804 gttttccacgctaaaattct-ctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtca 23806708  T
Q  277 tttcccaaca 286  Q
    ||||||||||    
T  23806707 tttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  27 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 124  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  125 ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 210  Q
    ||||  | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 50603138 - 50603403
Alignment:
Q  23 gtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccatt 120  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||    
T  50603138 gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt 50603237  T
Q  121 attattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatttt 220  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50603238 attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt 50603337  T
Q  221 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||   | ||||||||||||||    
T  50603338 acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaaca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 54967477 - 54967209
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  130 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 215  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || ||||||               
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  216 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 287  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  54967278 atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacat 54967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 44782733 - 44782522
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 184  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  185 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 273  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||| ||||    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  274 gcatttcccaacata 288  Q
    |||||||||||||||    
T  44782536 gcatttcccaacata 44782522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  130 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 203  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 185  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  186 gttttccacgctaaaatttt 205  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  30 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 129  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  130 gtgga 134  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 89 - 274
Target Start/End: Complemental strand, 54980051 - 54979854
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 184  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  185 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 273  Q
    ||||||||| ||||||||| | || ||||||           |||| |||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||    
T  54979951 ggttttccatgctaaaattctctt-tgtgtcattacacttttatttcacgtttccgct--agtgcttattttgagttgacggaggagggaaattatgcag 54979855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  108 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 207  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
Q  234 agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaaca 286  Q
    |||| |||||||||||||||||| ||||||||||| | ||| ||||||||||||    
T  17645928 agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca 17645981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 286 - 465
Target Start/End: Complemental strand, 29241120 - 29240936
Alignment:
Q  286 atattcgtctacatttagaactgacaggatgagtctttggagcagctacgaaatcacttttttattagaaccccacccatctcttcttcgtttgccgtct 385  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29241120 atattcgtctacgtttagaactgacaggatgagtctttggatcagctacgaaatcacttttttattagaaccccacccatctcttcttcgtttgtcgtct 29241021  T
Q  386 gcttcctcctctgaatttggctcgctagcttgccctaaattgctggataaagaggcactt-----cggatttctgcattggttgt 465  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  29241020 gcttcctcctctgaattaggctcgctagcttgccctaaattgctggataaagaggcacttaaacccggatttctgcattggttgt 29240936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 302 - 465
Target Start/End: Complemental strand, 16828651 - 16828482
Alignment:
Q  302 agaactgacaggatgagtctttggagcagctacgaaatcactttttt-attagaaccccacccatctcttcttcgtttgccgtctgcttcctcctctgaa 400  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| || | | || |||||||||||||||    
T  16828651 agaactgacaggatgagcctttggagcagctgagaaatcactttttttattagaaccccacccatctcttcttctttggtcttccgcttcctcctctgaa 16828552  T
Q  401 tttggctcgctagcttgccctaaattgctggataaagaggcactt-----cggatttctgcattggttgt 465  Q
    ||||||||||||||||||||| | |||||||||||||||||||||     ||||||||||||||||||||    
T  16828551 tttggctcgctagcttgccctgatttgctggataaagaggcacttaaacccggatttctgcattggttgt 16828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  130 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 215  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  216 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||| |||||||||||  |||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 36 - 289
Target Start/End: Original strand, 36167547 - 36167816
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  130 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatt-------- 218  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || |||||||||            
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  219 ---ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacatat 289  Q
       | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36167745 atttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacatat 36167816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 281
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  92 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 187  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  188 tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc 281  Q
    |||||| ||||||||| |||    |  |      |||| | |||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 71 - 286
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  71 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 170  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  171 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag 270  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| |    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  271 caggcatttcccaaca 286  Q
     |||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  111 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 203  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 268
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  130 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 229  Q
    |||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||| ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgttttcg 26555  T
Q  230 ctaaagtgcctattttgagttcacggaggagggaaatta 268  Q
    |||||||| |||||||||||||||| |||||||| ||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 89 - 286
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 184  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  185 ggttttccacgctaaaattttgttgtgtgtcatt-----------ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 273  Q
    ||||||||||||||||||| | || |||||||||           | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  274 gcatttcccaaca 286  Q
    |||||||||||||    
T  4842660 gcatttcccaaca 4842648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 36 - 287
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  130 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a 216  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  217 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat 287  Q
    ||| |||||||||||  |||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat 25857130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  130 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt 218  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | | |||      || |  |||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt 4835641  T
Q  219 ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    | |||||||| ||  ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4835640 tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 185  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  186 gttttccacgctaaaatttt 205  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  26 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 121  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  122 ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 195  Q
    |||||| | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  108 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 203  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  91 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 189  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  190 tccacgctaaaattttgttgtgt 212  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 203
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 185  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  186 gttttccacgctaaaatt 203  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  236 tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  137 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 203  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 24379347 - 24379279
Alignment:
Q  216 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    ||||||||||||| |||  ||||||||||| |||||||||||||| ||||||| | || ||||| ||||||    
T  24379347 attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca 24379279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 2727 - 2937
Alignment:
Q  89 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 184  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  185 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcag 273  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| |||     
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  274 gcatttcccaacat 287  Q
    ||||||||||||||    
T  2924 gcatttcccaacat 2937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 36 - 286
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
Q  36 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 129  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  130 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- 215  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  216 -attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
     |||| |||||||||||  |||||||||||||||||||||||||| |||||||| |||||||||| ||||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca 9757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  108 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 205  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  91 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 188  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  189 ttccacgctaaaatt 203  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  108 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 201  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  234 agtgcctattttgagttcacggaggagggaaatta 268  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 108 - 286
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
Q  108 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 204  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  205 tgttgtgtgtc---------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca 286  Q
    | ||||||            |||| ||||||| ||||  ||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca 342217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University