View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_low_6 (Length: 419)
Name: NF5009_low_6
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 54 - 411
Target Start/End: Complemental strand, 37583927 - 37583570
Alignment:
| Q |
54 |
aaggacttaaatatcaaggggtgcccaaccacaccagtaagaagtgctcggtaacgtatataagcgatggcttggttcttctcccttatcaactaactag |
153 |
Q |
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| T |
37583927 |
aaggacttaaatatcaaggggtgcccgaccacaccagtaagaagtgctcggtaacgtatataagcgatggcttggttcttctcccttatcaactaactag |
37583828 |
T |
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| Q |
154 |
cttttaagaaatgattcctcaattgcgcagatacttatcaattgatatttgatatcacagctggattgtcagcatctcgaaaagtttatctacaagggac |
253 |
Q |
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| T |
37583827 |
cttttaagaaatgattcctcaattgcgcagatacttatcaattgatatttgatatcacagctggattgtcagcatctcgaaaagtttatctacaagggac |
37583728 |
T |
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| Q |
254 |
tggtcaaaaaggtcgaatgaaacatcagagtgtagccgttgaaggctttcatgggaggtgtttttgacagggtcttcaatatcatgggtgcttgttcaac |
353 |
Q |
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| T |
37583727 |
tggtcaaaaaggtcgaatgaaacatcagagtgtagccgttgaaagctttcatgggaggtgtttttgacagggtcttcaatatcatgggtgcttgctcaac |
37583628 |
T |
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| Q |
354 |
tcaagttgaatagtaagaggtactcagtaaagtataaaatggtggcttgattcatctc |
411 |
Q |
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| T |
37583627 |
tcaagttgaatagtaagaggtactcagtaaagtataaaatggtggcttgattcttctc |
37583570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 37584022 - 37583981
Alignment:
| Q |
16 |
aggctgtataggaagggattgatcgaaaaggttgagagaagg |
57 |
Q |
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| T |
37584022 |
aggctgtataggaagggattgatcgaaaaggttgagagaagg |
37583981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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