View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5009_low_9 (Length: 321)
Name: NF5009_low_9
Description: NF5009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5009_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 39 - 311
Target Start/End: Complemental strand, 50308409 - 50308134
Alignment:
| Q |
39 |
tcatgttttaagagatcacaaagatgtttgttgtctttgtctttact---ctgtttagtttcatgttctcacttcctaacacaaaaccaaatggaaattt |
135 |
Q |
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| T |
50308409 |
tcatgttttaagagatcacaaagatgtttgttgtctttgtctttactgatctgtttagtttcatgttctcacttcctaacacaaaaccaaaaggaaattt |
50308310 |
T |
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| Q |
136 |
tgtatttcatttagtctggtgatcaataacagtttgaaatgcaccagccaatgctctcactttattctttctctcttctcgtaacttgctagcagtttct |
235 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50308309 |
tgtatttcatttagtctggtgatcgataacagtttgaaatgcaccagccaatgctctcactttattctttctctcttctcgtaacttgctagcagtttct |
50308210 |
T |
|
| Q |
236 |
tcaatcacatcattagatacttgagaagactctttcttcccttgcaccacgccactttcttcttccttttcctttg |
311 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50308209 |
tcaatcacatcattagatacttgagaagattctttcttcccttgcaccacgccactttcttcttccttttcctttg |
50308134 |
T |
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