View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5010-Insertion-2 (Length: 653)
Name: NF5010-Insertion-2
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5010-Insertion-2 |
 | |
|
| [»] chr8 (19 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 19)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 7 - 653
Target Start/End: Original strand, 15125765 - 15126411
Alignment:
| Q |
7 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15125765 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtgagagagggattaac |
15125864 |
T |
|
| Q |
107 |
atgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15125865 |
atgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
15125964 |
T |
|
| Q |
207 |
atacagctgcaatactattcaatgtaagtaaatattactaatattgtcctcgttttggtgtatcaaactaactgcatctacaacattacaggactgtgtc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15125965 |
atacagctgcaatactattcaatgtaagtaaatattactaatattgtcctcgtttcggtgtatcaaactaactgcatctacaacattacaggactgtgtc |
15126064 |
T |
|
| Q |
307 |
atgactgctttaagagacaaaacagtcattctagttactcatcaagtggagtttctctcggaagtcgatactatcttggtaaagtattttatttggatgt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15126065 |
atgactgctttaagagacaaaacagtcattctagttactcatcaagtggagtttctctcggaagtcgatactatcttggtaaagtatttcatttggatgt |
15126164 |
T |
|
| Q |
407 |
ctattatattacatctgaatgtaactaatatgatgaactcaaattctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctccta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15126165 |
ctattatattacatctgaatgtaactaatatgatgaactcaaattctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctccta |
15126264 |
T |
|
| Q |
507 |
aaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaacgatttgaatcaaaatagtgaggttttgtctaatcctcaagactctc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15126265 |
aaatctggaacagcctttgaactacttgtgagtgctcataaagtcacaattaacgatttgaatcaaaatagtgaggttttgtctaatcctcaagactctc |
15126364 |
T |
|
| Q |
607 |
atggtttttatctcacgaaaaatcaaagcgaaggagagatttctagc |
653 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15126365 |
atggtttttatctcacgaaaaatcaaagcgaaggagagatttctagc |
15126411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Complemental strand, 14949610 - 14949038
Alignment:
| Q |
7 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14949610 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcaatgattttagccatggtgatcttacagaaataggtgagagagggattaac |
14949511 |
T |
|
| Q |
107 |
atgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14949510 |
atgagtggaggacaaaagcaaaggattcagcttgctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
14949411 |
T |
|
| Q |
207 |
atacagctgcaatactattcaatgtaagtaaatattactaatattgtcctcgttttggtgtatcaaactaactgcatctacaacattacaggactgtgtc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14949410 |
atacagctgcaatactattcaatgtaagtaaatattactaatattgtcctcgtttcggtgtatcaaactaactgcatctacaacattacaggactgtgtc |
14949311 |
T |
|
| Q |
307 |
atgactgctttaagagacaaaacagtcattctagttactcatcaagtggagtttctctcggaagtcgatactatcttggtaaagtattttatttggatgt |
406 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14949310 |
atgactgctttaagagacaagacagtcattctcgttactcatcaagtggagtttctctcagaagtcgatactatcttggtaaagtatttcatttggatgt |
14949211 |
T |
|
| Q |
407 |
ctattatattacatctgaatgtaactaatatgatgaactcaaattctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctccta |
506 |
Q |
| |
|
|||||||||| | |||||| | |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14949210 |
ctattatattccttctgaacat-actaatatcatgaactcaaattctaggtaatggacgatggaaaagttattcaatcaggtagttatgagaatctccta |
14949112 |
T |
|
| Q |
507 |
aaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaacgatttgaatcaaaatagtga |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
14949111 |
aaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaatgagttgaatcaagatagtga |
14949038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 251 - 552
Target Start/End: Complemental strand, 5282131 - 5281829
Alignment:
| Q |
251 |
tgtcctcgttttggtgtatcaaactaactgcatctacaacattacaggactgtgtcatgactgctttaagagacaaaacagtcattctagttactcatca |
350 |
Q |
| |
|
||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5282131 |
tgtcctcattttggcgcatcaaactaactgcctctacaacattacaggactgtgtcatgaatgctttaagagagaaaacagtcattctagttactcatca |
5282032 |
T |
|
| Q |
351 |
agtggagtttctctcggaagtcgatactatcttggtaaagtattttatttggatgtctattatattacatctgaatgtaa-ctaatatgatgaactcaaa |
449 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||||||| ||||||| ||| ||| |||||||||||||| |
|
|
| T |
5282031 |
agtggagtttctctcagaagttgatactatcttggtaaagtatttcattttgatgtttattatattatatctgaacataatttaacatgatgaactcaaa |
5281932 |
T |
|
| Q |
450 |
ttctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaag |
549 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5281931 |
ttctaggtaatggagggtggaagagttattcaatcaggtagttatgagaatattttaacatctggaacagcctttgaactacttgtgagtgctcataaag |
5281832 |
T |
|
| Q |
550 |
aca |
552 |
Q |
| |
|
||| |
|
|
| T |
5281831 |
aca |
5281829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 5290444 - 5290215
Alignment:
| Q |
10 |
aagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaacatg |
109 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5290444 |
aagatatgagaaagcaatcaaagcttgtgccttagataaggatatcaatgattttagccatggtgatcttacagaaatcggtcagagagggattaacatg |
5290345 |
T |
|
| Q |
110 |
agtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5290344 |
agtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatctccttgatgatcctttcagtgcagttgatgctcata |
5290245 |
T |
|
| Q |
210 |
cagctgcaatactattcaatgtaagtaaat |
239 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
5290244 |
cagctgcaatactattcaatgtaagaaaat |
5290215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 5282860 - 5282626
Alignment:
| Q |
7 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
5282860 |
aacaagatatgagaaagcaattaaagcttgtgccttagataaggatatcaatgatttcagccatggtgatcttacagaaataggtcagagagggatcaat |
5282761 |
T |
|
| Q |
107 |
atgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
206 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5282760 |
ataagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatttatctccttgatgatccttttagtgcagttgatgctc |
5282661 |
T |
|
| Q |
207 |
atacagctgcaatactattcaatgtaagtaaatat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
5282660 |
atacagctgcaatactattcaatgtaagcaaatat |
5282626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 11833222 - 11833456
Alignment:
| Q |
7 |
aacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaac |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
11833222 |
aacaagatatgagaaagcaattaaagcttgttccttacataaggatatcaatgattttagccatggtgatcttacagaaattggtcagagagggatcaat |
11833321 |
T |
|
| Q |
107 |
atgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctc |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11833322 |
ataagtggaggacaaaagcaaaggattcaactagctagagcagtctataatgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctc |
11833421 |
T |
|
| Q |
207 |
atacagctgcaatactattcaatgtaagtaaatat |
241 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
11833422 |
atacagcagcaatacttttcaatgtaagcaaatat |
11833456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 271 - 572
Target Start/End: Complemental strand, 5290112 - 5289808
Alignment:
| Q |
271 |
aaactaactgcatctacaacattacaggactgtgtcatgactgctttaagagacaaaacagtcattctagttactcatcaagtggagtttctctcggaag |
370 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5290112 |
aaactaactgcatctgcaacattacaggattgtgtcatgactgctttaagagagaaaacagtcattctagttactcatcaagtggagtttctctcagaag |
5290013 |
T |
|
| Q |
371 |
tcgatactatcttggtaaagtattttatttggat--gtctattatattacatctgaa---tgtaactaatatgatgaactcaaattctaggtaatggagg |
465 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||||| | ||||||||||||| |||| ||| ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
5290012 |
ttgatactatcttggtaaaatatttcatttggattcctgtattatattacatttgaacattgt--ttaacaggatgaactcaaattctaggtcatggagg |
5289915 |
T |
|
| Q |
466 |
atggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgctcataaagacacaattaacgattt |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| ||||||||| || ||||| |||||||||| || || |
|
|
| T |
5289914 |
gtggaaaagttattcaatcaggtagttatgagaatctcctgacagctggaacagcctttgaacaacttgtgagagcacataaggacacaattactgagtt |
5289815 |
T |
|
| Q |
566 |
gaatcaa |
572 |
Q |
| |
|
||||||| |
|
|
| T |
5289814 |
gaatcaa |
5289808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 5306539 - 5306770
Alignment:
| Q |
10 |
aagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaacatg |
109 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||| || ||||||||||| || ||| |
|
|
| T |
5306539 |
aagatatcaaaaagcaattaaagcttgtgctttagataaggacttcaatgatttcagccatggtgatcttacagaaattggccagagagggatcaatatg |
5306638 |
T |
|
| Q |
110 |
agtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcata |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5306639 |
agtggaggacaaaagcagaggattcaactagctagagcagtctacagtgatgcagatatctatctccttgatgatcctttcagtgcagttgatgctcata |
5306738 |
T |
|
| Q |
210 |
cagctgcaatactattcaatgtaagtaaatat |
241 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
5306739 |
cagctgcaatactattcaatgtaagaaaatat |
5306770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 250 - 572
Target Start/End: Original strand, 5307212 - 5307540
Alignment:
| Q |
250 |
ttgtcctcgttttggtgtatcaaactaactgcatctacaacatt---acaggactgtgtcatgactgctttaagagacaaaacagtcattctagttactc |
346 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| | |||||| | ||||||||||||| |
|
|
| T |
5307212 |
ttgtcctcattttgttgtatcaaactaactgcatctacaacattgctacaggactgtgtcatgaatgttttaagaaagaaaacaattattctagttactc |
5307311 |
T |
|
| Q |
347 |
atcaagtggagtttctctcggaagtcgatactatcttggtaaagtattttatttggat--gtctattatattacatctgaa---tgtaactaatatgatg |
441 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| | |||||| |||||| |||| ||| ||| |||||| |
|
|
| T |
5307312 |
atcaagtggagtttctctcagaagttgatactatcttggtaaaatattttatttggattcctgtattattttacatttgaacattgt--ttaacatgatg |
5307409 |
T |
|
| Q |
442 |
aactcaaattctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgc |
541 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||||||| |||||||| || |
|
|
| T |
5307410 |
aactcaaattctaggtaatggagggtggaagagttattcaatcaggtagttatgagaatctcctgacaactggaaaagcctttgaacaacttgtgaaagc |
5307509 |
T |
|
| Q |
542 |
tcataaagacacaattaacgatttgaatcaa |
572 |
Q |
| |
|
||||| ||||||||||| || ||||||||| |
|
|
| T |
5307510 |
acataaggacacaattaatgagttgaatcaa |
5307540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 5313750 - 5313971
Alignment:
| Q |
13 |
atatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaacatgagt |
112 |
Q |
| |
|
||||||||| || ||||||| ||||| |||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
5313750 |
atatgagaatgccattaaagtatgtgccttagataaggatattgatgattttagctatggcgatcttacagaaataggtcagagagggattaacgtaagt |
5313849 |
T |
|
| Q |
113 |
ggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||| |
|
|
| T |
5313850 |
ggaggacagaagcaaaggattcaaatagctagagcagtctacaatgatgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacacag |
5313949 |
T |
|
| Q |
213 |
ctgcaatactattcaatgtaag |
234 |
Q |
| |
|
|||| || || ||||||||||| |
|
|
| T |
5313950 |
ctgctattctgttcaatgtaag |
5313971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 5351754 - 5351531
Alignment:
| Q |
11 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaacatga |
110 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
5351754 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
5351655 |
T |
|
| Q |
111 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatac |
210 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
5351654 |
gtggagggcaaaagcaaagaattcaactagctagagcagtctacaatgatgctgatgtatatcttcttgatgacccttttagtgcagtagatgcacatac |
5351555 |
T |
|
| Q |
211 |
agctgcaatactattcaatgtaag |
234 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
5351554 |
tgctgcaattctatttcatgtaag |
5351531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 251 - 392
Target Start/End: Original strand, 5314012 - 5314152
Alignment:
| Q |
251 |
tgtcctcgttttggtgtatcaaactaactgcatctacaacattacaggactgtgtcatgactgctttaagagacaaaacagtcattctagttactcatca |
350 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||||| |||||||||||| || ||||| || ||||||| |||||||||||| |||| || ||||| |
|
|
| T |
5314012 |
tgtcctcaatttagtgtatcaaactaactgcat-tacaaaattacaggactgcgtaatgacagccctaagagaaaaaacagtcattttagtgacacatca |
5314110 |
T |
|
| Q |
351 |
agtggagtttctctcggaagtcgatactatcttggtaaagta |
392 |
Q |
| |
|
||||||||||||||| ||||| ||||| || ||||||||||| |
|
|
| T |
5314111 |
agtggagtttctctcagaagttgatacaatattggtaaagta |
5314152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 11833763 - 11833878
Alignment:
| Q |
310 |
actgctttaagagacaaaacagtcattctagttactcatcaagtggagtttctctcggaagtcgatactatcttggtaaagtattttatttggatgtcta |
409 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||| |||| |||| || |
|
|
| T |
11833763 |
actgctttgagagcgaaaacagtcattctagttactcatcaagtggactttctctcagaagttgatactatcttggtaaattatttcattttgatgctta |
11833862 |
T |
|
| Q |
410 |
ttatattacatctgaa |
425 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
11833863 |
ttatattgcatttgaa |
11833878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 578 - 653
Target Start/End: Complemental strand, 14949016 - 14948941
Alignment:
| Q |
578 |
tgaggttttgtctaatcctcaagactctcatggtttttatctcacgaaaaatcaaagcgaaggagagatttctagc |
653 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14949016 |
tgaggttttgtctaatcctcaagacttgcatggtttatatctcactaaaaatcaaagtgaaggagagatttctagc |
14948941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 552
Target Start/End: Original strand, 5314403 - 5314512
Alignment:
| Q |
443 |
actcaaattctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtgagtgct |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| | ||| |||| ||| ||||||| |||||||| || |
|
|
| T |
5314403 |
actcaaattctaggtaatggaggatggaaaagttattcaatcgggcagttatcagaatctcttgaaagctgggacaacctttgacgaacttgtgaacgcc |
5314502 |
T |
|
| Q |
543 |
cataaagaca |
552 |
Q |
| |
|
|||||||||| |
|
|
| T |
5314503 |
cataaagaca |
5314512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 578 - 653
Target Start/End: Complemental strand, 5281779 - 5281704
Alignment:
| Q |
578 |
tgaggttttgtctaatcctcaagactctcatggtttttatctcacgaaaaatcaaagcgaaggagagatttctagc |
653 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||| || ||||||||||||||| |
|
|
| T |
5281779 |
tgaggttttgcctaatcctcaagactctcatggttttcatctcactaaaaataaaagtgagggagagatttctagc |
5281704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 578 - 642
Target Start/End: Original strand, 5307570 - 5307634
Alignment:
| Q |
578 |
tgaggttttgtctaatcctcaagactctcatggtttttatctcacgaaaaatcaaagcgaaggag |
642 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
5307570 |
tgaggttttgtctaatcctcaagactatcatggttttcctctcactaaaaatcaaagcgagggag |
5307634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 2301212 - 2301327
Alignment:
| Q |
95 |
agagggattaacatgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtg |
194 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||| || || |||||||||| || || | |||||||| || || ||| ||||||||||||| |||| |
|
|
| T |
2301212 |
agagggattaatatgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtg |
2301311 |
T |
|
| Q |
195 |
cagttgatgctcatac |
210 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
2301312 |
ctgtcgatgctcatac |
2301327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 2325431 - 2325546
Alignment:
| Q |
95 |
agagggattaacatgagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtg |
194 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||| || || |||||||||| || || | |||||||| || || ||| ||||||||||||| |||| |
|
|
| T |
2325431 |
agagggattaatatgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtg |
2325530 |
T |
|
| Q |
195 |
cagttgatgctcatac |
210 |
Q |
| |
|
| || ||||||||||| |
|
|
| T |
2325531 |
ctgtcgatgctcatac |
2325546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 7e-60; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 31526568 - 31526343
Alignment:
| Q |
9 |
caagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtcagagagggattaacat |
108 |
Q |
| |
|
||||||||||||| || |||||||||||||| || || | |||||| ||||||| || || ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
31526568 |
caagatatgagaatgctattaaagcttgtgccttggacgaagatatcaatgatttgagtcatggtgatcttacagaaataggtcaaagagggattaacct |
31526469 |
T |
|
| Q |
109 |
gagtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||||||| || || |
|
|
| T |
31526468 |
aagtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctccttgatgaccctttcagcgcagttgacgcgcac |
31526369 |
T |
|
| Q |
209 |
acagctgcaatactattcaatgtaag |
234 |
Q |
| |
|
|| ||||| || || ||||||||||| |
|
|
| T |
31526368 |
actgctgctattctgttcaatgtaag |
31526343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 537
Target Start/End: Complemental strand, 31525978 - 31525890
Alignment:
| Q |
449 |
attctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaaaatctggaacagcctttgaactacttgtga |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||| |
|
|
| T |
31525978 |
attctaggtaatggaggatggaaaagttattcaatcaggtagttatgagaatctcctaatagctgggacagcctttgaacaacttgtga |
31525890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 248 - 365
Target Start/End: Complemental strand, 31526300 - 31526183
Alignment:
| Q |
248 |
tattgtcctcgttttggtgtatcaaactaactgcatctacaacattacaggactgtgtcatgactgctttaagagacaaaacagtcattctagttactca |
347 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| |||||||||||||| || || || |
|
|
| T |
31526300 |
tattgtcctcatcatggtgcatcaaactaactgcatctacaaaattacaggactgcattatgactgctctaagagagaaaacagtcattcttgtgacaca |
31526201 |
T |
|
| Q |
348 |
tcaagtggagtttctctc |
365 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31526200 |
tcaagtggagtttctctc |
31526183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 14240621 - 14240567
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
14240621 |
gatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatacag |
14240567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 41451630 - 41451576
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
41451630 |
gatgctgatatctatctatttgacgatccttttagtgctgttgatgctcatacag |
41451576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41438461 - 41438409
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatac |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
41438461 |
gatgctgatatctatctatttgatgatccttttagtgctgtggatgctcatac |
41438409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 14372737 - 14372791
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
14372737 |
gatgctgatatatatctatttgatgatccttttagtgccgtggatgctcatacag |
14372791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 22740807 - 22740861
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
||||||||||| ||||| || |||||||| || |||||||||||||||||||||| |
|
|
| T |
22740807 |
gatgctgatatatatctgctcgatgatccctttagtgcagttgatgctcatacag |
22740861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 22727019 - 22726965
Alignment:
| Q |
158 |
gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
||||||||||| ||||| || || ||||| || |||||||||||||||||||||| |
|
|
| T |
22727019 |
gatgctgatatatatctgctcgacgatccctttagtgcagttgatgctcatacag |
22726965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 22739965 - 22740018
Alignment:
| Q |
159 |
atgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag |
212 |
Q |
| |
|
|||||||||| ||||| || || ||||| || |||||||||||||||||||||| |
|
|
| T |
22739965 |
atgctgatatttatctgctcgacgatccctttagtgcagttgatgctcatacag |
22740018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 39664834 - 39664794
Alignment:
| Q |
170 |
tatcttcttgatgatcctttcagtgcagttgatgctcatac |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39664834 |
tatcttcttgatgatgtattcagtgcagttgatgctcatac |
39664794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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