View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5010-Insertion-3 (Length: 397)
Name: NF5010-Insertion-3
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5010-Insertion-3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 102 - 397
Target Start/End: Complemental strand, 28253503 - 28253204
Alignment:
| Q |
102 |
atggacattttaatgtgttaccaatggataa-tctattaaaaaacttagatgctttaccgttgcactgttcacacaatagacacaaacaagaaagacatg |
200 |
Q |
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| T |
28253503 |
atggacattttaatgtgttaccgatggataaatctattaaaaaacttagatgctttaccgttgcactgttcacacaatagacacaaacaagaaagacatg |
28253404 |
T |
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| Q |
201 |
aattgaaaaggttccaagaattataaaactgagaataagacagaagaaagtgaaaaggacacagaagccatttcacataaagaacagcaacgaagccaac |
300 |
Q |
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| T |
28253403 |
aattgaaaaggttccaagaattataaaactgagaataagacagaagaaagtgaaaaggacacagaagccatttcacataaagaacagcaatgaagccaac |
28253304 |
T |
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| Q |
301 |
gacaacgaatgccacagcctctctttccatttccagctgtgaccaagtaa--catgt-ccccccttctccccaaatgatatccctctcacatgctctttc |
397 |
Q |
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| T |
28253303 |
gacaacgaatgccacactctctctttccatttccagctgtgaccaagtaatccatgtcccccccttctccccaaatgatatccctctcacatgctctttc |
28253204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 28253609 - 28253560
Alignment:
| Q |
39 |
aatcaaataatttagtgattagaatttacctttataatatgaataagtga |
88 |
Q |
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| T |
28253609 |
aatcaaatattttagtgaccagaatttacctttttaatgtgaataagtga |
28253560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 4254269 - 4254219
Alignment:
| Q |
41 |
tcaaataatttagtgattagaattt-acctttataatatgaataagtgagg |
90 |
Q |
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| T |
4254269 |
tcaaataatctagtgattagaagttcacctttttaatatgaataagtgagg |
4254219 |
T |
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