View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5010-Insertion-6 (Length: 308)

Name: NF5010-Insertion-6
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5010-Insertion-6
NF5010-Insertion-6
[»] chr4 (1 HSPs)
chr4 (25-308)||(40063047-40063331)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 308
Target Start/End: Complemental strand, 40063331 - 40063047
Alignment:
Q  25 tttcttttctccatcatcatcatcaannnnnnn-cccttatacacgtttttatcacatctattttttccttgtaagagaaaaaacagtttccttaatctt 123  Q
    ||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40063331 tttctattctccatcatcatcatcaattttttttcccttatacacgtttttatcacatctattttttccttgtcagagaaaaaacagtttccttaatctt 40063232  T
Q  124 cataataactctattctacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattattacaacacagcaca 223  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40063231 cataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattattacaacacagcaca 40063132  T
Q  224 aacccgcttcacttcacttctacaagaaattgttagaatatggggaattgtcaggctgcagaattggcaacatttgtgattcatc 308  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  40063131 aacccacttcacttcacttctacaagaaattgttagaatatggggaattgtcaagctgcagaattggcaacagttgtgattcatc 40063047  T

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