View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5010_high_1 (Length: 467)
Name: NF5010_high_1
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5010_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 14305429 - 14305792
Alignment:
| Q |
19 |
gcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagta |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14305429 |
gcaaaagctaagagggagagcaaaaacaaggaatcaagagcagaaagtagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagaa |
14305528 |
T |
|
| Q |
119 |
tgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatggctataagattatg |
218 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14305529 |
tgaattgtggtgtagaagaagatgaatgtaaaggtaaaagggtgcatgaaggagaagttagccatgcagaagtagaagaagacatggctataagattatg |
14305628 |
T |
|
| Q |
219 |
gaatgataattgttaaggtatcatgttatttgttagaaaatatgtaatgagtttgttgcagaaagtatgagagacagagcatgtaattgtaaaagacaga |
318 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14305629 |
gaatgataattgttaaggtttcatattatttgttagaaaatatgtaatgagtttgttgcagaaagtatgagagacagagcatgtaattgtataagacaga |
14305728 |
T |
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| Q |
319 |
cccccacaactataaattaccacgcgttgcgcgagtttcacgatgtctcccactagatcctcac |
382 |
Q |
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| T |
14305729 |
cccccacaactataaattaccacgcgttgcgcgagtttcacgatgtctcccactagatcctcac |
14305792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 14283673 - 14283856
Alignment:
| Q |
21 |
aaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatg |
120 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14283673 |
aaaagctaagagggagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatg |
14283772 |
T |
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| Q |
121 |
aattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatg |
204 |
Q |
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| T |
14283773 |
aattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagaagaagaagacatg |
14283856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 14321820 - 14321992
Alignment:
| Q |
19 |
gcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| || |
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| T |
14321820 |
gcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaacaagaagtctctgaggacatggagatagcaaaatgaaccttaaccattgaatta |
14321919 |
T |
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| Q |
119 |
tgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagt |
191 |
Q |
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||| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14321920 |
tgagttctggtgtagaggaagatgaatctacaggtaaaagggtgcatgaaggagaagttagccatgaagaagt |
14321992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 14270895 - 14271078
Alignment:
| Q |
19 |
gcaaaagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagta |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| | |
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| T |
14270895 |
gcaaaagctaagagggagagcaaaaacaaggaatcaagagaagaaagaagaagcctctgaggacatggagatcggaaaatgaaccttaaccattgaagaa |
14270994 |
T |
|
| Q |
119 |
tgaattgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatggctataagattat |
217 |
Q |
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||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |
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| T |
14270995 |
tga-----ggttt-------gatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgatgaagt---agaagacatggttaaaagattat |
14271078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 25886494 - 25886673
Alignment:
| Q |
23 |
aagctaagagaaagagcaaaaacaaggaatcaagagcagaaagaagaagtctctgaggacaaggagataggaaaatgaaccttaaccattgaagtatgaa |
122 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| || |||||||||||||||||| |
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| T |
25886494 |
aagctaagagggagagcaaaaacaaggaatcaagagcagaaaggagaagtctttgaggacatggagataggaaaagaaaggttaaccattgaagtatgag |
25886593 |
T |
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| Q |
123 |
ttgtggtgtagaggaagatgaatgtataggtaaaagggtgcatgaaggagaagttagccatgcagaagtggaagaagacatgg |
205 |
Q |
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| T |
25886594 |
ttgtggtgtagaggaagatgaatctataggtaaaagggtgcatgaaggagaagttagccatgaagaa---gaagaagacatgg |
25886673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 44350366 - 44350509
Alignment:
| Q |
48 |
ggaatcaagagcagaaagaagaagtctctgaggacaagg-agataggaaaatgaaccttaaccattgaagtatgaattgtggtgtagaggaagatgaatg |
146 |
Q |
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|||||||||||||||||| |||||||| |||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||||| || |
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| T |
44350366 |
ggaatcaagagcagaaaggagaagtctttgaggacatttcagataggaaaagaaaggttaaccattgaagtatgagttgtggtgtagaggaagatggatc |
44350465 |
T |
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| Q |
147 |
tataggtaaaagggtgcatgaaggagaagttagccatgcagaag |
190 |
Q |
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| T |
44350466 |
tgtaggtaaaagggtgcatgaaggagaagttagccatgaagaag |
44350509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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