View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5010_low_1 (Length: 562)
Name: NF5010_low_1
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5010_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 21271745 - 21272033
Alignment:
| Q |
1 |
aattgtccattaccgtgtagcatggttcgttagtgggtttcaaattcgtccttttccatgcctttattttttgtccctttctgttaactgattttcttca |
100 |
Q |
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| T |
21271745 |
aattgtccattaccgtgtagcatggttcgttagtgggtttcaaattcgtccttttccatgcctttattttttgtccctttctgttaactgattttcttca |
21271844 |
T |
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| Q |
101 |
cctaccctttccaacttgccca---tttcttctttaattccacttcaaattcaaaatcaccccactgtaatcttattaggcttgactattacttggtact |
197 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
21271845 |
cctaccctttccaacttggccaccatttcttctttaattccacttcaaattcaaaatcaccccactataatgttattaggcttgagtattacttggtact |
21271944 |
T |
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| Q |
198 |
tagttattttagtcctttcatattacttggtactaaattattttagtccttaaatgtataaggttttgttattataatttctgaaaata |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21271945 |
tagttattttagtcctttcatattacttggtactaaattattttagtccttaaatgtataaggttttgttattataatgtctgaaaata |
21272033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 382 - 562
Target Start/End: Original strand, 21272148 - 21272328
Alignment:
| Q |
382 |
gacatttttccttattacaatttagtagtttgattgtgaagataaatttgtatggccataaagataaagttgtgtcctgcttagccccacataccattgc |
481 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272148 |
gacagttttccttattacaatttagtagtttgattgtgaagataaatttgtatggccataaagataaagttgtgtcctgcttagccccacataccattgc |
21272247 |
T |
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| Q |
482 |
cgcctacgtgtttgtcagaggtcagatatgcaagaatccattaggcccgcagaaacttaggtccaagggtccaagtcatcc |
562 |
Q |
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| T |
21272248 |
cgtctacgagttcgtcacaggtcagatatgcaagaatccattaggcccgcagaaacttaggtccaagggtccaagtcatcc |
21272328 |
T |
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