View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5010_low_4 (Length: 319)

Name: NF5010_low_4
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5010_low_4
NF5010_low_4
[»] chr1 (6 HSPs)
chr1 (138-294)||(3011630-3011786)
chr1 (139-203)||(3794859-3794923)
chr1 (238-285)||(3794813-3794860)
chr1 (22-65)||(32364878-32364921)
chr1 (42-79)||(3011534-3011571)
chr1 (32-73)||(50656247-50656288)
[»] chr7 (1 HSPs)
chr7 (140-216)||(31814398-31814475)
[»] chr2 (2 HSPs)
chr2 (32-73)||(23292446-23292487)
chr2 (32-65)||(39760791-39760824)
[»] chr5 (2 HSPs)
chr5 (165-218)||(32382621-32382676)
chr5 (32-65)||(6460459-6460492)
[»] scaffold0116 (1 HSPs)
scaffold0116 (32-65)||(8564-8597)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 138 - 294
Target Start/End: Original strand, 3011630 - 3011786
Alignment:
Q  138 gcttcattacgtccggtttaatgccagttttctatgcttcagctgctttgacttagtttaatattaattaatactaattctcgatgccttaattaatttg 237  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3011630 gcttcattacgtcctgtttaatgccagttttctatgcttcagccgctttgacttagtttaatattaattaatactaattctcgatgccttaattaatttg 3011729  T
Q  238 tagaaaaagaatccgaatttgaaaaactaaagggttgtaggaatcgaatgagtgaat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3011730 tagaaaaagaatccgaatttgaaaaactaaagggttgtaggaatcgaatgagtgaat 3011786  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 3794923 - 3794859
Alignment:
Q  139 cttcattacgtccggtttaatgccagttttctatgcttcagctgctttgacttagtttaatatta 203  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  3794923 cttcattacgtcctgtttaatgccagttttctatgcttccgctgctttgacttggtttaatatta 3794859  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 3794860 - 3794813
Alignment:
Q  238 tagaaaaagaatccgaatttgaaaaactaaagggttgtaggaatcgaa 285  Q
    ||||||||||| | |||||||||||||| |||||||||||||||||||    
T  3794860 tagaaaaagaacctgaatttgaaaaactcaagggttgtaggaatcgaa 3794813  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 32364921 - 32364878
Alignment:
Q  22 aaacttgctgaaaaccggttaaaaccggtgactcggccggtttt 65  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||    
T  32364921 aaactcgctaaaaaccggttaaaaccggtgactcggccggtttt 32364878  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 3011534 - 3011571
Alignment:
Q  42 aaaaccggtgactcggccggttttatgaaccgatccgg 79  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3011534 aaaaccgatgactcggccggttttatgaaccgatccgg 3011571  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 50656288 - 50656247
Alignment:
Q  32 aaaaccggttaaaaccggtgactcggccggttttatgaaccg 73  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  50656288 aaaaccggtgaaaaccggtgactcggcaggtttgatgaaccg 50656247  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 31814475 - 31814398
Alignment:
Q  140 ttcattacgtccggttt-aatgccagttttctatgcttcagctgctttgacttagtttaatattaattaatactaatt 216  Q
    |||||||||||| |||| ||| ||||||||||| |||||| || ||||||||| ||||||||||||||||||||||||    
T  31814475 ttcattacgtcctgttttaataccagttttctaagcttcaacttctttgacttggtttaatattaattaatactaatt 31814398  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 23292446 - 23292487
Alignment:
Q  32 aaaaccggttaaaaccggtgactcggccggttttatgaaccg 73  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  23292446 aaaaccggtgaaaaccggtgactcggccggtttgatgaaccg 23292487  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 39760791 - 39760824
Alignment:
Q  32 aaaaccggttaaaaccggtgactcggccggtttt 65  Q
    |||||| |||||||||||||||||||||||||||    
T  39760791 aaaaccagttaaaaccggtgactcggccggtttt 39760824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 32382621 - 32382676
Alignment:
Q  165 ttttctatgcttcagctgctttgactta--gtttaatattaattaatactaattct 218  Q
    |||||||||||| |||| |||||||||   ||||||||||||||||||||||||||    
T  32382621 ttttctatgctttagctactttgacttttggtttaatattaattaatactaattct 32382676  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 6460492 - 6460459
Alignment:
Q  32 aaaaccggttaaaaccggtgactcggccggtttt 65  Q
    |||||||||||||||||||||||||| |||||||    
T  6460492 aaaaccggttaaaaccggtgactcggacggtttt 6460459  T

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Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 8597 - 8564
Alignment:
Q  32 aaaaccggttaaaaccggtgactcggccggtttt 65  Q
    ||||||||||||||||||||||||||||| ||||    
T  8597 aaaaccggttaaaaccggtgactcggccgatttt 8564  T

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