View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5010_low_7 (Length: 237)

Name: NF5010_low_7
Description: NF5010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5010_low_7
NF5010_low_7
[»] chr4 (2 HSPs)
chr4 (116-221)||(27409032-27409138)
chr4 (1-50)||(27408917-27408966)
[»] chr5 (2 HSPs)
chr5 (117-207)||(31810091-31810180)
chr5 (1-50)||(19524136-19524185)
[»] scaffold0013 (2 HSPs)
scaffold0013 (139-221)||(96446-96529)
scaffold0013 (1-50)||(96314-96363)
[»] chr7 (2 HSPs)
chr7 (139-221)||(25153942-25154025)
chr7 (4-50)||(25153815-25153861)
[»] chr8 (1 HSPs)
chr8 (4-50)||(29739556-29739602)
[»] chr2 (3 HSPs)
chr2 (4-50)||(10368298-10368344)
chr2 (4-50)||(37867913-37867959)
chr2 (2-50)||(14716108-14716156)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 116 - 221
Target Start/End: Original strand, 27409032 - 27409138
Alignment:
Q  116 ttttattaagaggttaccatggcaccatggctgaaaacgcctcacaatacaacaaaaatccagaaattacacagtggcctgcacaagc-aaaaccaaaac 214  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||    
T  27409032 ttttattaaaaggttaccatggcaccatggctgaaaacgcctcataatacaaccaaaatccagaaattacacaatggcctgcccaagcaaaaaccaaaac 27409131  T
Q  215 tcccaac 221  Q
    |||||||    
T  27409132 tcccaac 27409138  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27408917 - 27408966
Alignment:
Q  1 ccattcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  27408917 ccattcgattgcaggtctattatgtaccaccctgaaccaccaacacctaa 27408966  T

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Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 31810091 - 31810180
Alignment:
Q  117 tttattaagaggttaccatggcaccatggctgaaaacgcctcacaatacaacaaaaatccagaaattacacagtggcctgcacaagcaaaa 207  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  31810091 tttattaagaggttaccatggcacca-ggcagaaaacgcctcacaatacaaccaaaatccagaaaatacacggtggcctgcacaagcaaaa 31810180  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 19524136 - 19524185
Alignment:
Q  1 ccattcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    ||||||||||||||||| ||| | | ||||||||||||||||||| ||||    
T  19524136 ccattcgattgcaggtccattgtataccacactgaaccaccaacatctaa 19524185  T

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Target: scaffold0013 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 96446 - 96529
Alignment:
Q  139 accatggctgaaaacgcctcacaatacaacaaaaatccagaaattacacagtggcctgcacaagc-aaaaccaaaactcccaac 221  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  96446 accatggctgaaaacgcctcacaatacaaccaaaatccagaaattacacaatggcttgcacaagcaaaaaccaaaactcccaac 96529  T

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Target: scaffold0013; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 96314 - 96363
Alignment:
Q  1 ccattcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  96314 ccattcgattgcaggtctattatgtaccacactgaaccaccaacacctaa 96363  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 221
Target Start/End: Original strand, 25153942 - 25154025
Alignment:
Q  139 accatggctgaaaacgcctcacaatacaacaaaaatccagaaattacacagtggcctgcacaag-caaaaccaaaactcccaac 221  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  25153942 accatggctgaaaacgcctcacagtacaaccaaaatccagaaattacacagcggcctgcacaagaaaaaaccaaaactctcaac 25154025  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 25153815 - 25153861
Alignment:
Q  4 ttcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  25153815 ttcgattgcaggtctattatgtaccacactgaaccaccaacacctaa 25153861  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 29739602 - 29739556
Alignment:
Q  4 ttcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    |||||||| ||||| ||||| | ||||||||||||||||||||||||    
T  29739602 ttcgattgtaggtccattatataccacactgaaccaccaacacctaa 29739556  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 10368344 - 10368298
Alignment:
Q  4 ttcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    |||||||||| ||| ||||| | ||||||||||||||||||||||||    
T  10368344 ttcgattgcatgtccattatataccacactgaaccaccaacacctaa 10368298  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 37867913 - 37867959
Alignment:
Q  4 ttcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||||||    
T  37867913 ttcgattgtaggtctattatataccacattgaaccaccaacacctaa 37867959  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 14716156 - 14716108
Alignment:
Q  2 cattcgattgcaggtctattatgttccacactgaaccaccaacacctaa 50  Q
    |||||||||||| ||||||||| | | ||| ||||||||||||||||||    
T  14716156 cattcgattgcatgtctattatatacaacaatgaaccaccaacacctaa 14716108  T

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