View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011-Insertion-1 (Length: 980)
Name: NF5011-Insertion-1
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011-Insertion-1 |
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| [»] scaffold0148 (2 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 10 - 788
Target Start/End: Complemental strand, 27655 - 26885
Alignment:
| Q |
10 |
tccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27655 |
tccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
27556 |
T |
|
| Q |
110 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcnnnnnnnnnnatataaaattagaaacaaattcatgattctgaagattc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
27555 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattc |
27456 |
T |
|
| Q |
210 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
309 |
Q |
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| T |
27455 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
27356 |
T |
|
| Q |
310 |
tcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcgtgttgatca |
409 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
27355 |
tcgcatacttcaactttagatgcaataccacaacaggccaaggtcaccttagcttcacggccgctaacaacgttagttacagagttattcgtgttgatca |
27256 |
T |
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| Q |
410 |
aagtagaagaaagtttacccttcaaaatcaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
509 |
Q |
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| T |
27255 |
aagtagaagaaagcttacccttcataatgaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
27156 |
T |
|
| Q |
510 |
cgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctgga |
609 |
Q |
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| T |
27155 |
cgcatgaccagtgacaatacgtgctctgaacaacttgaagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctgga |
27056 |
T |
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| Q |
610 |
aacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaatttgtaccaaaagtaagtattaatattc |
709 |
Q |
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| T |
27055 |
accattctacttgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaaattgtaccaaaagtaagtattaat---- |
26960 |
T |
|
| Q |
710 |
tattattcatgtaactaagaatattacaaattcacttaatttgatgaatttggattatagctgaagttgaaaaggtaaa |
788 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26959 |
----attcatgtaactaagaatattacaaattcacttaatttgatgaatttggattatagctgaagttaaaaaggtaaa |
26885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 810 - 980
Target Start/End: Complemental strand, 26892 - 26722
Alignment:
| Q |
810 |
aaggtaaacaagtgttattatgttctttgcatatttttcagcacctatatcctctcctacttctacaaaagagccaaacagagagaagtctaaaagctta |
909 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26892 |
aaggtaaaagagtgttattaagttctttgcataattttcagcacctagatcctctcctactgctacaaaagagccaaacagagagaagtctaaaagctta |
26793 |
T |
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| Q |
910 |
ttctatttgattctgggcttatcacttttcggcgtagttgctctagtaggcatcattatttttgcttatgc |
980 |
Q |
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| T |
26792 |
ttctatttgattctgggcttatctcttttcggcgtagttgctctagttggcatcattatttttgcttatgc |
26722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 201 - 673
Target Start/End: Complemental strand, 2307 - 1838
Alignment:
| Q |
201 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
300 |
Q |
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||||||||||||||||| || |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| || |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
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| Q |
301 |
gtggagacctcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcg |
400 |
Q |
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| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaacatctcaacg------ggtaaacttagcttcaccgccaacaacaacgttagttacaaagttattag |
2114 |
T |
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| Q |
401 |
tgttgatcaaagtagaagaaagtttacccttcaaaatcaggattattcctt--tacta-gttgtgatgaaggatctaaacggacaggaagtctgaacgtt |
497 |
Q |
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||| || | |||| ||||| |||||| || | ||| || || |||| || || | ||||| ||||||||||||| || ||| | | |||| ||| |
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| T |
2113 |
tgtagacccaagttcaagaacatttaccatttataatgagcataattctttcaaacaatattgtgctgaaggatctaaatagaaaggcaatttgaaggtt |
2014 |
T |
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| Q |
498 |
tctttaccgtttcgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgatt |
597 |
Q |
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| T |
2013 |
ttctcaccgttttactttgccaatgacaatccatgctctgaacaagtggaagttagttgggatccaccttccgaactcgtttgtgataactttgttgatt |
1914 |
T |
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| Q |
598 |
gccatggctggaaacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcga |
673 |
Q |
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| |||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||| |||||| |
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| T |
1913 |
tctatggttggaaacattctacctgtagtaaaggaaacaagtgtctttgcaatgcaaagtataaatggagtggcga |
1838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
12 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
111 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
112 |
agacataggtatgcatatgatgattaaattaga |
144 |
Q |
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||| ||||||||||| |||||||||||||||| |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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