View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011-Insertion-2 (Length: 352)
Name: NF5011-Insertion-2
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 23177706 - 23178024
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatattgacagtataagcagagaaaagactagaagcatgctaag |
107 |
Q |
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| T |
23177706 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatatggacagtataagcagagaaaagactagaagcatgctaag |
23177805 |
T |
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| Q |
108 |
ttgaacagagtacggtccacggtcttactaagcaacccaccgaaattgaacagtaaacccg-aaagagaaacctgggggttagagcactataaataagag |
206 |
Q |
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| T |
23177806 |
ttgaacagagtacggtccacggtcttactaagcaatccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
23177905 |
T |
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| Q |
207 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcagggagtctatatattgcacatctga |
306 |
Q |
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| T |
23177906 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
23178005 |
T |
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| Q |
307 |
gcaccagtacagtacatac |
325 |
Q |
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| T |
23178006 |
gcaccagtacagtacatac |
23178024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 185 - 324
Target Start/End: Original strand, 23890770 - 23890909
Alignment:
| Q |
185 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggg |
284 |
Q |
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| T |
23890770 |
gttagagcactataaataagaggtcggtagagagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcagga |
23890869 |
T |
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| Q |
285 |
agtctatatattgcacatctgagcaccagtacagtacata |
324 |
Q |
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| T |
23890870 |
agtctatatattgcacatctgaggtcaagtatagtacata |
23890909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23890695 - 23890732
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgca |
45 |
Q |
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| T |
23890695 |
ttaaatcctctatcgccacagtctgcataaatggtgca |
23890732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 7869182 - 7869053
Alignment:
| Q |
185 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggg |
284 |
Q |
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||||||||||||| |||||| | ||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||||||| ||||| || |
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| T |
7869182 |
gttagagcactattaataagcagcaggtagaaaatttaataccttctttggaaacttaactccatgtggtggtcgagctatatgttcatgtgcatctgga |
7869083 |
T |
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| Q |
285 |
agtctatatattgcacatctgagcaccagt |
314 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7869082 |
agtctatatattgcacatctgagcaccagt |
7869053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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