View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_high_22 (Length: 253)
Name: NF5011_high_22
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 32827385 - 32827310
Alignment:
| Q |
85 |
ttagttcccagactcaccc-atctgcatgggtcaagtttatttatttgatcatgcatcttctgaatataatgacag |
159 |
Q |
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| T |
32827385 |
ttagttcccagactcaccccatctgcatgggtcaagtttatttatttgataatgcatcttctgaatataatgacag |
32827310 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 32827106 - 32827061
Alignment:
| Q |
208 |
gagaccatcatgattaaggtactagcaaaggcaacacttcaaagtt |
253 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32827106 |
gagatcatcatgattaaggtaccagcaaaggcaacacttcaaagtt |
32827061 |
T |
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