View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5011_high_28 (Length: 237)

Name: NF5011_high_28
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5011_high_28
NF5011_high_28
[»] chr7 (2 HSPs)
chr7 (1-187)||(47370529-47370716)
chr7 (179-228)||(47370102-47370151)
[»] chr3 (2 HSPs)
chr3 (70-123)||(6792996-6793049)
chr3 (70-139)||(8467357-8467426)
[»] chr4 (1 HSPs)
chr4 (198-228)||(29981949-29981979)
[»] chr1 (2 HSPs)
chr1 (198-228)||(7674772-7674802)
chr1 (198-228)||(36613643-36613673)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 47370716 - 47370529
Alignment:
Q  1 atttgtacctattgaatgaaaatgctggtgcatgcatgct-aatagttgttggatgcatgatgctaaaatgaaaagaggtagaagaataggagaaaaatc 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47370716 atttgtacctattgaatgaaaatgctggtgcatgcatgcttaatagttgttggatgcatgatgctaaaatgaaaagaggtagaagaataggagaaaaatc 47370617  T
Q  100 tcagtagataatggtaaagaaaaatctccaagttcaaagaaggcaaattactgtcaagtgtcaaacagtcaaagcaatataaacagta 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47370616 tcagtagataatggtaaagaaaaatctccaagttcaaagaaggcaaattactgtcaagtgtcaaacagtcaaagcaatataaacagta 47370529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 47370151 - 47370102
Alignment:
Q  179 taaacagtataagcattacctttcctcgctttcgtgttcctcttgatgat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47370151 taaacagtataagcattacctttcctcgctttcgtgttcctcttgatgat 47370102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 6792996 - 6793049
Alignment:
Q  70 gaaaagaggtagaagaataggagaaaaatctcagtagataatggtaaagaaaaa 123  Q
    ||||||||||||||||||||||| || |||||||||||| ||| ||||||||||    
T  6792996 gaaaagaggtagaagaataggaggaagatctcagtagatgatgataaagaaaaa 6793049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 8467426 - 8467357
Alignment:
Q  70 gaaaagaggtagaagaataggagaaaaatctcagtagataatggtaaagaaaaatctccaagttcaaaga 139  Q
    ||||||||| ||||||||||||| |||||||||| ||||   | ||| ||||||| ||||||||||||||    
T  8467426 gaaaagaggaagaagaataggaggaaaatctcagaagatggcgataaggaaaaatatccaagttcaaaga 8467357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 29981949 - 29981979
Alignment:
Q  198 ctttcctcgctttcgtgttcctcttgatgat 228  Q
    |||||||||||||||||||||||||||||||    
T  29981949 ctttcctcgctttcgtgttcctcttgatgat 29981979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 7674802 - 7674772
Alignment:
Q  198 ctttcctcgctttcgtgttcctcttgatgat 228  Q
    |||||||||||||||||||||||||||||||    
T  7674802 ctttcctcgctttcgtgttcctcttgatgat 7674772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 36613643 - 36613673
Alignment:
Q  198 ctttcctcgctttcgtgttcctcttgatgat 228  Q
    |||||||||||||||||||||||||||||||    
T  36613643 ctttcctcgctttcgtgttcctcttgatgat 36613673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University