View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_high_30 (Length: 213)
Name: NF5011_high_30
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_high_30 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 27945904 - 27946118
Alignment:
| Q |
1 |
tgtaattatcataagaatgataaattttgagaaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttt |
100 |
Q |
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| T |
27945904 |
tgtaattatcataagaatgataaattttgagaaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttt |
27946003 |
T |
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| Q |
101 |
tgttactatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacatataagaaatttaagatttg--gtg |
198 |
Q |
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| T |
27946004 |
tgtttctatgttagaatgttcactcttccttgcagtcagaccttagtattttgtgtgaattattatttgaatacagataagaaatttaagatttggagtg |
27946103 |
T |
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| Q |
199 |
tcaaagtcccaatca |
213 |
Q |
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| T |
27946104 |
ttaaagtcccaatca |
27946118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 27548855 - 27548714
Alignment:
| Q |
1 |
tgtaattatcataagaatgataaattttgagaaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttt |
100 |
Q |
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| T |
27548855 |
tgtaattatcataagaatgataaattttgagaatgctttttttgtttgatgaataataacaatgaattatacttttcaagcagctcctatgtttactttt |
27548756 |
T |
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| Q |
101 |
tgttactatgttagaatgttcactcttccttgcagtcagacc |
142 |
Q |
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| T |
27548755 |
tgtttctatgttagaatgttgattcttccttgcagttagacc |
27548714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 27437415 - 27437557
Alignment:
| Q |
1 |
tgtaattatcataagaatgataaattttgagaaggcattttttgtttgatgaataataacaatgaatttcacttttaaagcagctcttatgtttactttt |
100 |
Q |
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|||||||||||||| ||||||| ||||||| | |||||||| |||||||||||||| |||||||||| |||||| ||| ||||| ||||||| | || |
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| T |
27437415 |
tgtaattatcataaaaatgatagattttgactatgcatttttcgtttgatgaataatgacaatgaattcgacttttcaagtagctcctatgttttttgtt |
27437514 |
T |
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| Q |
101 |
tgttactatgttagaatgttcactcttccttgcagtcagacctt |
144 |
Q |
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| T |
27437515 |
tgtt-ttatgttaaaattttcactcttccttgcagtcagacctt |
27437557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 27548631 - 27548583
Alignment:
| Q |
140 |
accttagtattttgtgtgaattattatttgaatacatataagaaattta |
188 |
Q |
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| T |
27548631 |
accttagtattttgtgtgaattattattttaatgcagataagaaattta |
27548583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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