View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_high_9 (Length: 365)
Name: NF5011_high_9
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_high_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 47370625 - 47370989
Alignment:
| Q |
1 |
tcctattcttttaccacttttcactttagcatcatgctgccaacaactattat-catgcaggcgacagcattttcattcaataagtaaaaatctaaaaac |
99 |
Q |
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| T |
47370625 |
tcctattcttctacctcttttcattttagcatcatgcatccaacaactattaagcatgcatgcaccagcattttcattcaataggtacaaatctaaaaac |
47370724 |
T |
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| Q |
100 |
catgagttatatagcactaggctcccataaaatgaaacaatgaatactattcagatttgatttttgggaagaagnnnnnnncacatcaaaagagagaatg |
199 |
Q |
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| T |
47370725 |
catgagttatatagcactaggctcccctaaaatgaaacaatgaatactattcagatttgatttt-gggaagaagaaaaaaacacatcaaaagagagaatg |
47370823 |
T |
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| Q |
200 |
tgtcacttgacaattgcaccaaactacactcatgatctatcattgttaggatctgacatataagtaatgttcggggggaacttgtgagaaagagaagaaa |
299 |
Q |
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| T |
47370824 |
tgtcacttgacaattgcaccaaactacactcatgatctatcattgttaggatctgacatataagtaatgttcggggggaacttgtgagaaagagaagaaa |
47370923 |
T |
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| Q |
300 |
cacattatttttggcgagagtcttgcaaatgttgaggaagtagtagcggcggcggaatgatgcaaa |
365 |
Q |
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| T |
47370924 |
cacattatttttggcgagagtcttgcaaatgttgaggaagtagtagcggcggcggaatgatgcaaa |
47370989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 7173254 - 7173499
Alignment:
| Q |
88 |
aaatctaaaaaccatgagttatatagcactaggctcccataaaatgaaacaatgaatactattcagatttgatttttgggaagaagnnnnnnncacatca |
187 |
Q |
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| T |
7173254 |
aaatcgaaaaaccatgagttctattgctctaggctgtgctaaaatgaaacagtgaatactattcagatttgattatgggaaaaaaat-------acatta |
7173346 |
T |
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| Q |
188 |
aaagagagaatgtgtcacttgacaattgcaccaaactacactcatgatctatcattgttaggatctgacatataagtaatgttcggggggaacttgtgag |
287 |
Q |
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| T |
7173347 |
aaagagaaaacgtgtaactagattatttcatcaaactacactcttgatctatcattgttttcctgtgacaaataagtaatgttttgagggaacttgtgag |
7173446 |
T |
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| Q |
288 |
aaagagaagaaacac-attatttttggcgagagtcttgcaaatgttgaggaag |
339 |
Q |
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| T |
7173447 |
caagagaagagacacgattattgttggtgagagtctagcggatgttgaggaag |
7173499 |
T |
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