View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5011_low_12 (Length: 345)
Name: NF5011_low_12
Description: NF5011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5011_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 43143512 - 43143826
Alignment:
| Q |
19 |
gaagcatagttagctatttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattattaaaaagggttttattata |
118 |
Q |
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| T |
43143512 |
gaagcatagttagctatttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattattaaaaagggttttattgta |
43143611 |
T |
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| Q |
119 |
tagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactt |
218 |
Q |
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| T |
43143612 |
cagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttcttagttgtcactt |
43143711 |
T |
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| Q |
219 |
taaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggt |
318 |
Q |
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| T |
43143712 |
taaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggt |
43143811 |
T |
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| Q |
319 |
ggatattctgatgat |
333 |
Q |
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| T |
43143812 |
ggatattttgatgat |
43143826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 108 - 333
Target Start/End: Original strand, 43155707 - 43155932
Alignment:
| Q |
108 |
gttttattatatagccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaagcaccttttgccttttctt |
207 |
Q |
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||||||||||| |||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |
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| T |
43155707 |
gttttattatacagccctgttcgatgggctttgccactggtggaagaacattctttctttggggaggctgtatgatggcaagtagcttttgccttttctt |
43155806 |
T |
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| Q |
208 |
agttgtcactttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
307 |
Q |
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| T |
43155807 |
agttgtcgctttaaagaaaaacttaattttaacatgttagtttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggac |
43155906 |
T |
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| Q |
308 |
ttaaagatggtggatattctgatgat |
333 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43155907 |
ttaaagatggtggatattctgatgat |
43155932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 43155486 - 43155557
Alignment:
| Q |
36 |
ttgaattaagtcacaacattaattagagaacttttcatttaggcttttgataatgtatcattattaaaaagg |
107 |
Q |
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| T |
43155486 |
ttgaattaagttgcagtattaattagataactttttatttagacttttgatagtgtatcattatttaaaagg |
43155557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 33833754 - 33833669
Alignment:
| Q |
248 |
tttttctccagatgcatgccgatgactttaggcaagatcgttatggtgtagtctcgggacttaaagatggtggatattctgatgat |
333 |
Q |
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||||||| |||||||||| || ||||||||||||||| || |||||||||||| | |||| || |||||||||||||||||||| |
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| T |
33833754 |
tttttctaaagatgcatgctgaagactttaggcaagataattgtggtgtagtctcagaacttcaaaatggtggatattctgatgat |
33833669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 33833886 - 33833817
Alignment:
| Q |
120 |
agccttgttcgatgggctttgacactagtggaagaacattctttctgtggggaggctgtatgatggcaag |
189 |
Q |
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|||||||||| || || |||| |||| |||||| ||| |||||| |||||||||| || ||||||||||| |
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| T |
33833886 |
agccttgttcaataggatttgccactggtggaaaaaccttctttttgtggggaggttgcatgatggcaag |
33833817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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